Evidence map›Paper›PMID 34576068›Full record

ArticleInternational journal of molecular sciences2021

A Human Pan-Cancer System Analysis of Procollagen-Lysine, 2-Oxoglutarate 5-Dioxygenase 3 (PLOD3).

Siming Gong, Yingjuan Duan, Changwu Wu, Georg Osterhoff, Nikolas Schopow, Sonja Kallendrusch

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. A FeFrontiers in molecular biosciences · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Siming GongInstitute of Anatomy, University of Leipzig, Liebigstraße 13, 04103 Leipzig, Germany.ORCID 0000-0002-0968-490X
Yingjuan DuanFaculty of Chemistry and Mineralogy, University of Leipzig, 04103 Leipzig, Germany.
Changwu WuInstitute of Anatomy, University of Leipzig, Liebigstraße 13, 04103 Leipzig, Germany.
Georg OsterhoffSarcoma Center, Department of Orthopedics, Trauma and Plastic Surgery, University Hospital Leipzig, 04103 Leipzig, Germany.
Nikolas SchopowInstitute of Anatomy, University of Leipzig, Liebigstraße 13, 04103 Leipzig, Germany.
Sonja KallendruschInstitute of Anatomy, University of Leipzig, Liebigstraße 13, 04103 Leipzig, Germany.
Leipzig University · DEUniversity Hospital Leipzig · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The overexpression of the enzymes involved in the degradation of procollagen lysine is correlated with various tumor entities. Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 (PLOD3) expression was found to be correlated to the progression and migration of cancer cells in gastric, lung and prostate cancer. Here, we analyzed the gene expression, protein expression, and the clinical parameters of survival across 33 cancers based on the Clinical Proteomic Tumor Analysis Consortium (CPTAC), function annotation of the mammalian genome 5 (FANTOM5), Gene Expression Omnibus (GEO), Genotype-Tissue Expression (GTEx), Human Protein Atlas (HPA) and The Cancer Genome Atlas (TCGA) databases. Genetic alteration, immune infiltration and relevant cellular pathways were analyzed in detail. PLOD3 expression negatively correlated with survival periods and the infiltration level of CD8

Indexed as

Gene Expression Regulation, NeoplasticGene OntologyGene Regulatory NetworksHumansLymphocytes, Tumor-InfiltratingMicrosatellite InstabilityMutationNeoplasmsProcollagen-Lysine, 2-Oxoglutarate 5-DioxygenaseSurvival AnalysisPLOD3 protein, humanProcollagen-Lysine, 2-Oxoglutarate 5-Dioxygenasebig dataenrichment analysisimmune infiltrationimmunotherapypan-cancerPLOD3prognosistumor

Identifiers

PMID34576068
PMCPMC8467482
OpenAlexW3200294745

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.