Evidence map›Paper›PMID 34575741›Full record

ReviewJournal of fungi (Basel, Switzerland)2021

Current Insight into Culture-Dependent and Culture-Independent Methods in Discovering Ascomycetous Taxa.

Nalin N Wijayawardene, Mohammad Bahram, Iván Sánchez-Castro, Dong-Qin Dai, Kahandawa G S U Ariyawansa, Udeni Jayalal, Nakarin Suwannarach, Leho Tedersoo

Abstract readReview
In one paragraph

Review in Journal of fungi (Basel, Switzerland), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. A comprehensive guide to assess gut mycobiome and its role in pathogenesis and treatment of inflammatory bowel disease.Indian journal of gastroenterology : official journal of the Indian Society of Gastroenterology · 2024
    Review
  13. Diversity of Endophytes ofLife (Basel, Switzerland) · 2024
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. OMICS and Other Advanced Technologies in Mycological Applications.Journal of fungi (Basel, Switzerland) · 2023
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Nalin N WijayawardeneCentre for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China.ORCID 0000-0003-0522-5498
Mohammad BahramDepartment of Ecology, Swedish University of Agricultural Sciences, Ulls väg 16, 756 51 Uppsala, Sweden.
Iván Sánchez-CastroDepartamento de Microbiología, Campus de Fuentenueva, Universidad de Granada, 18071 Granada, Spain.
Dong-Qin DaiCentre for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China.
Kahandawa G S U AriyawansaDepartment of Plant Sciences, Faculty of Science, University of Colombo, Colombo 00300, Sri Lanka.
Udeni JayalalDepartment of Natural Resources, Sabaragamuwa University of Sri Lanka, Belihuloya 70140, Sri Lanka.
Nakarin SuwannarachResearch Center of Microbial Diversity and Sustainable Utilization, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand.ORCID 0000-0002-2653-1913
Leho TedersooMycology and Microbiology Center, University of Tartu, 14A Ravila, 50411 Tartu, Estonia.

Funding

National Natural Science Foundation of China NSFC 31950410558, NSFC 31760013State Key Laboratory of Functions and Applications of Medicinal Plants, Guizhou Medical University FAMP201906K
6 · The paper itself

Abstract

Culture techniques are vital in both traditional and modern fungal taxonomy. Establishing sexual-asexual links and synanamorphs, extracting DNA and secondary metabolites are mainly based on cultures. However, it is widely accepted that a large number of species are not sporulating in nature while others cannot be cultured. Recent ecological studies based on culture-independent methods revealed these unculturable taxa, i.e., dark taxa. Recent fungal diversity estimation studies suggested that environmental sequencing plays a vital role in discovering missing species. However, Sanger sequencing is still the main approach in determining DNA sequences in culturable species. In this paper, we summarize culture-based and culture-independent methods in the study of ascomycetous taxa. High-throughput sequencing of leaf endophytes, leaf litter fungi and fungi in aquatic environments is important to determine dark taxa. Nevertheless, currently, naming dark taxa is not recognized by the ICN, thus provisional naming of them is essential as suggested by several studies.

Indexed as

consolidated species conceptfungal diversitymolecular taxonomymorphological characterspolyphasic approachtraditional taxonomy

Identifiers

PMID34575741
PMCPMC8467358

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.