Evidence map›Paper›PMID 34573432›Full record

ArticleGenes2021

Genome-Wide Survey for Microdeletions or -Duplications in 155 Patients with Lower Urinary Tract Obstructions (LUTO).

Luca M Schierbaum, Sophia Schneider, Stefan Herms, Sugirthan Sivalingam, Julia Fabian, Heiko Reutter, Stefanie Weber, Waltraut M Merz, Marcin Tkaczyk, Monika Miklaszewska and 10 more

Abstract read
In one paragraph

Article in Genes, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Luca M SchierbaumInstitute of Human Genetics, University Hospital of Bonn, 53127 Bonn, Germany.
Sophia SchneiderInstitute of Human Genetics, University Hospital of Bonn, 53127 Bonn, Germany.ORCID 0000-0003-4872-0093
Stefan HermsInstitute of Human Genetics, University Hospital of Bonn, 53127 Bonn, Germany.ORCID 0000-0002-2786-8200
Sugirthan SivalingamInstitute for Medical Biometry, Informatics and Epidemiology, Medical Faculty, University of Bonn, 53127 Bonn, Germany.ORCID 0000-0001-5239-5137
Julia FabianInstitute of Human Genetics, University Hospital of Bonn, 53127 Bonn, Germany.
Heiko ReutterInstitute of Human Genetics, University Hospital of Bonn, 53127 Bonn, Germany.ORCID 0000-0002-3591-5265
Stefanie WeberDepartment of Pediatrics, University Hospital Marburg, 35033 Marburg, Germany.
Waltraut M MerzDepartment of Obstetrics and Prenatal Medicine, University of Bonn, 53127 Bonn, Germany.
Marcin TkaczykDepartment of Pediatrics, Immunology and Nephrology, Polish Mother's Memorial Hospital Research Institute of Lodz, 93-428 Łódź, Poland.ORCID 0000-0003-1753-7560
Monika MiklaszewskaDepartment of Pediatric Nephrology and Hypertension, Jagiellonian University Medical College, 31-007 Krakow, Poland.ORCID 0000-0003-0776-4946
Przemyslaw SikoraDepartment of Pediatric Nephrology Medical University of Lublin, 20-059 Lublin, Poland.ORCID 0000-0002-5698-6863
Agnieszka SzmigielskaDepartment of Pediatrics and Nephrology, Medical University of Warsaw, 02-091 Warsaw, Poland.
Grazyna KrzemienDepartment of Pediatrics and Nephrology, Medical University of Warsaw, 02-091 Warsaw, Poland.
Katarzyna ZachwiejaDepartment of Pediatric Nephrology and Hypertension, Jagiellonian University Medical College, 31-007 Krakow, Poland.
Maria SzczepanskaDepartment of Pediatrics, School of Medicine with the Division of Dentistry in Zabrze, Medical University of Silesia in Katowice, 40-055 Katowice, Poland.ORCID 0000-0001-5336-261X
Katarzyna Taranta-JanuszDepartment of Pediatrics and Nephrology, Medical University of Białystok, 15-089 Białystok, Poland.ORCID 0000-0002-8762-8866
Pawel KrollNeurourology Unit, Pediatric Surgery and Urology Clinic, 61-701 Poznań, Poland.ORCID 0000-0003-4903-5477
Marcin PolokDepartment of Pediatric Surgery and Urology, University of Zielona Góra, 65-417 Zielona Góra, Poland.ORCID 0000-0002-1235-563X
Marcin ZaniewDepartment of Pediatrics, University of Zielona Góra, 65-417 Zielona Góra, Poland.
Alina C HilgerInstitute of Human Genetics, University Hospital of Bonn, 53127 Bonn, Germany.ORCID 0000-0002-0354-7584

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lower urinary tract obstruction (LUTO) is, in most cases, caused by anatomical blockage of the bladder outlet. The most common form are posterior urethral valves (PUVs), a male-limited phenotype. Here, we surveyed the genome of 155 LUTO patients to identify disease-causing CNVs. Raw intensity data were collected for CNVs detected in LUTO patients and 4.392 healthy controls using CNVPartition, QuantiSNP and PennCNV. Overlapping CNVs between patients and controls were discarded. Additional filtering implicated CNV frequency in the database of genomic variants, gene content and final visual inspection detecting 37 ultra-rare CNVs. After, prioritization qPCR analysis confirmed 3 microduplications, all detected in PUV patients. One microduplication (5q23.2) occurred de novo in the two remaining microduplications found on chromosome 1p36.21 and 10q23.31. Parental DNA was not available for segregation analysis. All three duplications comprised 11 coding genes: four human specific lncRNA and one microRNA. Three coding genes (

Indexed as

Gene DeletionGene DuplicationDNA Copy Number VariationsFetal DiseasesGenome-Wide Association StudyHumansMaleUrethral ObstructionUrinary Bladder Neck Obstructioncopy number variations (CNVs)de novolower urinary tract obstruction (LUTO)male limited phenotypematernal transmissionposterior urethral valves

Identifiers

PMID34573432
PMCPMC8468665

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.