Evidence map›Paper›PMID 34573425›Full record

ArticleGenes2021

Breeding Tomato Hybrids for Flavour: Comparison of GWAS Results Obtained on Lines and F1 Hybrids.

Estelle Bineau, José Luis Rambla, Santiago Priego-Cubero, Alexandre Hereil, Frédérique Bitton, Clémence Plissonneau, Antonio Granell, Mathilde Causse

Abstract readComparative Study
In one paragraph

Article in Genes, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Estelle BineauINRAE, UR1052, Genetics and Breeding of Fruit and Vegetables, 67 Allée des Chênes, Centre de Recherche PACA, Domaine Saint Maurice, CS60094, 84143 Montfavet, France.
José Luis RamblaInstituto de Biología Molecular y Celular de Plantas, CSIC, Universidad Politécnica de Valencia, 46022 Valencia, Spain.
Santiago Priego-CuberoInstituto de Biología Molecular y Celular de Plantas, CSIC, Universidad Politécnica de Valencia, 46022 Valencia, Spain.
Alexandre HereilINRAE, UR1052, Genetics and Breeding of Fruit and Vegetables, 67 Allée des Chênes, Centre de Recherche PACA, Domaine Saint Maurice, CS60094, 84143 Montfavet, France.
Frédérique BittonINRAE, UR1052, Genetics and Breeding of Fruit and Vegetables, 67 Allée des Chênes, Centre de Recherche PACA, Domaine Saint Maurice, CS60094, 84143 Montfavet, France.ORCID 0000-0002-4040-9017
Clémence PlissonneauGAUTIER Semences, Route d'Avignon, 13630 Eyragues, France.
Antonio GranellInstituto de Biología Molecular y Celular de Plantas, CSIC, Universidad Politécnica de Valencia, 46022 Valencia, Spain.ORCID 0000-0003-4266-9581
Mathilde CausseINRAE, UR1052, Genetics and Breeding of Fruit and Vegetables, 67 Allée des Chênes, Centre de Recherche PACA, Domaine Saint Maurice, CS60094, 84143 Montfavet, France.ORCID 0000-0002-0407-4985

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tomato flavour is an important goal for breeders. Volatile organic compounds (VOCs) are major determinants of tomato flavour. Although most tomato varieties for fresh market are F1 hybrids, most studies on the genetic control of flavour-related traits are performed on lines. We quantified 46 VOCs in a panel of 121 small fruited lines and in a test cross panel of 165 hybrids (the previous panel plus 44 elite cherry tomato lines crossed with a common line). High and consistent heritabilities were assessed for most VOCs in the two panels, and 65% of VOC contents were strongly correlated between lines and hybrids. Additivity was observed for most VOCs. We performed genome wide association studies (GWAS) on the two panels separately, along with a third GWAS on the test cross subset carrying only F1 hybrids corresponding to the line panel. We identified 205, 183 and 138 associations, respectively. We identified numerous overlapping associations for VOCs belonging to the same metabolic pathway within each panel; we focused on seven chromosome regions with clusters of associations simultaneously involved in several key VOCs for tomato aroma. The study highlighted the benefit of testcross panels to create tasty F1 hybrid varieties.

Indexed as

Genome-Wide Association StudyVolatile Organic CompoundsChimeraCluster AnalysisFruitGenes, PlantGenetic VariationPlant BreedingQuantitative Trait LociSolanum lycopersicumTasteVolatile Organic CompoundsbreedingflavourGWAStomatovolatiles

Identifiers

PMID34573425
PMCPMC8469758

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.