Evidence map›Paper›PMID 34573170›Full record

ArticleBrain sciences2021

Alcohol Dependence in Rats Is Associated with Global Changes in Gene Expression in the Central Amygdala.

Brent R Kisby, Sean P Farris, Michelle M McManus, Florence P Varodayan, Marisa Roberto, R Adron Harris, Igor Ponomarev

Open access · goldAbstract read
In one paragraph

Article in Brain sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Brent R KisbyDepartment of Pharmacology and Neuroscience, Texas Tech University Health Sciences Center, Lubbock, TX 79430, USA.ORCID 0000-0002-2421-1190
Sean P FarrisDepartment of Neuroscience, University of Texas at Austin, Austin, TX 78715, USA.
Michelle M McManusDepartment of Pharmacology and Neuroscience, Texas Tech University Health Sciences Center, Lubbock, TX 79430, USA.
Florence P VarodayanDepartment of Psychology, Binghamton University-SUNY, Binghamton, NY 13902, USA.
Marisa RobertoDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA.
R Adron HarrisDepartment of Neuroscience, University of Texas at Austin, Austin, TX 78715, USA.
Igor PonomarevDepartment of Pharmacology and Neuroscience, Texas Tech University Health Sciences Center, Lubbock, TX 79430, USA.
Texas Tech University · USScripps Research Institute · USThe University of Texas at Austin · USUniversity of Pittsburgh · US

Funding

Viral Vector CoreP60AA006420 · NIAAA · SCRIPPS RESEARCH INSTITUTE, THE · PI MARISA ROBERTO · 2003 to 2026
$46.3M
Electrophysiology of alcohol in extended amygdelaU01AA013498 · NIAAA · SCRIPPS RESEARCH INSTITUTE, THE · PI MARISA ROBERTO · 2001 to 2026
$12.6M
SYSTEMIC NEUROPHARMACOLOGYP50AA006420 · NIAAA · SCRIPPS RESEARCH INSTITUTE · PI SANNA, PIETRO P · 1985 to 2002
$5.1M
Integrative Neuroscience Initiative on AlcoholismU24AA025479 · NIAAA · UNIVERSITY OF TEXAS AT AUSTIN · PI ROBERT O. MESSING · 2017 to 2026
$5.0M
Regulation of Ethanol Effects on Synaptic TransmissionR01AA015566 · NIAAA · SCRIPPS RESEARCH INSTITUTE, THE · PI ROBERTO, MARISA · 2006 to 2019
$4.6M
Neuroplasticity of the Extended Amygdala CRF circuitry in alcohol dependenceR01AA021491 · NIAAA · SCRIPPS RESEARCH INSTITUTE, THE · PI ROBERTO, MARISA · 2013 to 2024
$3.9M
Gene-environment interaction: the brain CRF system in alcohol preferring msP ratsR37AA017447 · NIAAA · SCRIPPS RESEARCH INSTITUTE, THE · PI ROBERTO, MARISA · 2016 to 2025
$3.7M
The neuroimmune model of excessive alcohol consumption: Transition to Alcohol Use Disorder.R01AA027096 · NIAAA · UNIVERSITY OF TEXAS AT AUSTIN · PI PONOMAREV, IGOR · 2018 to 2022
$2.9M
Neuroimmune mechanisms in stress and alcohol comorbidityR01AA027700 · NIAAA · SCRIPPS RESEARCH INSTITUTE, THE · PI ROBERTO, MARISA · 2019 to 2023
$2.4M
Gene-environment interaction: the brain CRF system in alcohol preferring msP ratsR01AA017447 · NIAAA · SCRIPPS RESEARCH INSTITUTE, THE · PI ROBERTO, MARISA · 2009 to 2013
$1.8M
Alcohol-induced neuroadapation of prefrontal cortical projectionsR00AA025408 · NIAAA · STATE UNIVERSITY OF NY,BINGHAMTON · PI VARODAYAN, FLORENCE PRABHA · 2020 to 2022
$747k
Long Non-Coding RNA Regulation of Alcohol Drinking BehaviorR00AA024836 · NIAAA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI FARRIS, SEAN P · 2020 to 2022
$667k
NIAAA NIH HHS AA006420NIAAA NIH HHS AA013498NIAAA NIH HHS AA015566NIAAA NIH HHS AA017447NIAAA NIH HHS AA021491NIAAA NIH HHS AA024836NIAAA NIH HHS AA025408NIAAA NIH HHS AA025479NIAAA NIH HHS AA027096NIAAA NIH HHS AA027700NIAAA NIH HHS P60 AA006420NIAAA NIH HHS R01 AA017447NIAAA NIH HHS R01 AA021491NIAAA NIH HHS R01 AA027096NIAAA NIH HHS R01 AA027700NIAAA NIH HHS U01 AA013498NIAAA NIH HHS U24 AA025479
6 · The paper itself

Abstract

Alcohol dependence is associated with adverse consequences of alcohol (ethanol) use and is evident in most severe cases of alcohol use disorder (AUD). The central nucleus of the amygdala (CeA) plays a critical role in the development of alcohol dependence and escalation of alcohol consumption in dependent subjects. Molecular mechanisms underlying the CeA-driven behavioral changes are not well understood. Here, we examined the effects of alcohol on global gene expression in the CeA using a chronic intermittent ethanol (CIE) vapor model in rats and RNA sequencing (RNA-Seq). The CIE procedure resulted in robust changes in CeA gene expression during intoxication, as the number of differentially expressed genes (DEGs) was significantly greater than those expected by chance. Over-representation analysis of cell types, functional groups and molecular pathways revealed biological categories potentially important for the development of alcohol dependence in our model. Genes specific for astrocytes, myelinating oligodendrocytes, and endothelial cells were over-represented in the DEG category, suggesting that these cell types were particularly affected by the CIE procedure. The majority of the over-represented functional groups and molecular pathways were directly related to the functions of glial and endothelial cells, including extracellular matrix (ECM) organization, myelination, and the regulation of innate immune response. A coordinated regulation of several ECM metalloproteinases (e.g.,

Indexed as

alcohol use disorder (AUD)central nucleus of the amygdala (CeA)chronic intermittent alcohol vapordifferentially expressed genes (DEGs)extracellular matrixRNA-Seq

Identifiers

PMID34573170
PMCPMC8468792
OpenAlexW3198276529

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.