Evidence map›Paper›PMID 34571955›Full record

ArticleCells2021

Identification and Characterization of an Affimer Affinity Reagent for the Detection of the cAMP Sensor, EPAC1.

Hanna K Buist, Urszula Luchowska-Stańska, Boy van Basten, Jessica Valli, Brian O Smith, George S Baillie, Colin Rickman, Bryon Ricketts, Alex Davidson, Ryan Hannam and 2 more

Abstract read
In one paragraph

Article in Cells, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Hanna K BuistInstitute of Biological Chemistry, Biophysics and Bioengineering, School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh Campus, Edinburgh EH14 4AS, UK.ORCID 0000-0001-6856-4329
Urszula Luchowska-StańskaInstitute of Biological Chemistry, Biophysics and Bioengineering, School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh Campus, Edinburgh EH14 4AS, UK.
Boy van BastenInstitute of Biological Chemistry, Biophysics and Bioengineering, School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh Campus, Edinburgh EH14 4AS, UK.
Jessica ValliInstitute of Biological Chemistry, Biophysics and Bioengineering, School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh Campus, Edinburgh EH14 4AS, UK.
Brian O SmithInstitute of Molecular Cell and System Biology, College of Medical, Veterinary & Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK.ORCID 0000-0003-3363-4168
George S BaillieInstitute of Cardiovascular & Medical Science, College of Medical, Veterinary & Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK.ORCID 0000-0003-2469-6316
Colin RickmanInstitute of Biological Chemistry, Biophysics and Bioengineering, School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh Campus, Edinburgh EH14 4AS, UK.
Bryon RickettsAvacta Life Sciences, Unit 20, Ash Way, Thorp Arch Estate & Retail Park, Wetherby LS23 7FA, UK.
Alex DavidsonAvacta Life Sciences, Unit 20, Ash Way, Thorp Arch Estate & Retail Park, Wetherby LS23 7FA, UK.
Ryan HannamAvacta Life Sciences, Unit 20, Ash Way, Thorp Arch Estate & Retail Park, Wetherby LS23 7FA, UK.
Joanne SunderlandAvacta Life Sciences, Unit 20, Ash Way, Thorp Arch Estate & Retail Park, Wetherby LS23 7FA, UK.
Stephen J YarwoodInstitute of Biological Chemistry, Biophysics and Bioengineering, School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh Campus, Edinburgh EH14 4AS, UK.ORCID 0000-0001-9489-9253

Funding

British Heart Foundation FS/17/12/32703Medical Research Scotland PhD-868-2015
6 · The paper itself

Abstract

An exchange protein directly activated by cAMP 1 (EPAC1) is an intracellular sensor for cAMP that is involved in a wide variety of cellular and physiological processes in health and disease. However, reagents are lacking to study its association with intracellular cAMP nanodomains. Here, we use non-antibody Affimer protein scaffolds to develop isoform-selective protein binders of EPAC1. Phage-display screens were carried out against purified, biotinylated human recombinant EPAC1ΔDEP protein (amino acids 149-811), which identified five potential EPAC1-selective Affimer binders. Dot blots and indirect ELISA assays were next used to identify Affimer 780A as the top EPAC1 binder. Mutagenesis studies further revealed a potential interaction site for 780A within the EPAC1 cyclic nucleotide binding domain (CNBD). In addition, 780A was shown to co-precipitate EPAC1 from transfected cells and co-localize with both wild-type EPAC1 and a mis-targeting mutant of EPAC1(K212R), predominantly in perinuclear and cytosolic regions of cells, respectively. As a novel EPAC1-selective binder, 780A therefore has the potential to be used in future studies to further understand compartmentalization of the cAMP-EPAC1 signaling system.

Indexed as

AnimalsCell LineCell Line, TumorCell NucleusChlorocebus aethiopsCOS CellsCyclic AMPCytosolGuanine Nucleotide Exchange FactorsHumansSignal TransductionCyclic AMPGuanine Nucleotide Exchange FactorsRAPGEF3 protein, humanaffimercyclic AMPEPAC1microscopyphage displayprotein interactions

Identifiers

PMID34571955
PMCPMC8465552

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.