Evidence map›Paper›PMID 34571809›Full record

ArticleBiology2021

Artificial Intelligence Meets Marine Ecotoxicology: Applying Deep Learning to Bio-Optical Data from Marine Diatoms Exposed to Legacy and Emerging Contaminants.

Nuno M Rodrigues, João E Batista, Pedro Mariano, Vanessa Fonseca, Bernardo Duarte, Sara Silva

Open access · goldAbstract read
In one paragraph

Article in Biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Potential ofBiology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Nuno M RodriguesLASIGE, Faculty of Sciences, University of Lisbon, Campo Grande, 1749-016 Lisbon, Portugal.ORCID 0000-0001-5312-8276
João E BatistaLASIGE, Faculty of Sciences, University of Lisbon, Campo Grande, 1749-016 Lisbon, Portugal.ORCID 0000-0002-2997-8550
Pedro MarianoBiosystems and Integrative Sciences Institute (BioISI), Faculty of Sciences, University of Lisbon, Campo Grande, 1749-016 Lisbon, Portugal.ORCID 0000-0003-3813-1009
Vanessa FonsecaMARE-Marine and Environmental Sciences Center, Faculty of Sciences, University of Lisbon, Campo Grande, 1749-016 Lisbon, Portugal.ORCID 0000-0002-6374-1194
Bernardo DuarteMARE-Marine and Environmental Sciences Center, Faculty of Sciences, University of Lisbon, Campo Grande, 1749-016 Lisbon, Portugal.ORCID 0000-0003-1914-7435
Sara SilvaLASIGE, Faculty of Sciences, University of Lisbon, Campo Grande, 1749-016 Lisbon, Portugal.
University of Lisbon · PT

Funding

BINDER PTDC/CCI-INF/29168/2017FCiências.ID CEECIND/00511/2017, DL57/2016/CP1479/CT0024 and CEECIND/02513/2017Fundação para a Ciência e a Tecnologia SFRH/BD/143972/2019GADgET DSAIPA/DS/0022/2018LASIGE Research Units UIDB/00408/2020 and UIDP/00408/2020MARE UIDB/04292/2020OPTOX PTDC/CTA-AMB/30056/2017PREDICT PTDC/CCI-CIF/29877/2017
6 · The paper itself

Abstract

Over recent decades, the world has experienced the adverse consequences of uncontrolled development of multiple human activities. In recent years, the total production of chemicals has been composed of environmentally harmful compounds, the majority of which have significant environmental impacts. These emerging contaminants (ECs) include a wide range of man-made chemicals (such as pesticides, cosmetics, personal and household care products, pharmaceuticals), which are of worldwide use. Among these, several ECs raised concerns regarding their ecotoxicological effects and how to assess them efficiently. This is of particular interest if marine diatoms are considered as potential target species, due to their widespread distribution, being the most abundant phytoplankton group in the oceans, and also being responsible for key ecological roles. Bio-optical ecotoxicity methods appear as reliable, fast, and high-throughput screening (HTS) techniques, providing large datasets with biological relevance on the mode of action of these ECs in phototrophic organisms, such as diatoms. However, from the large datasets produced, only a small amount of data are normally extracted for physiological evaluation, leaving out a large amount of information on the ECs exposure. In the present paper, we use all the available information and evaluate the application of several machine learning and deep learning algorithms to predict the exposure of model organisms to different ECs under different doses, using a model marine diatom (

Indexed as

artificial intelligencedeep learningestuarine systemseutrophicationmachine learningtime series classificationwater contamination

Identifiers

PMID34571809
PMCPMC8470171
OpenAlexW3201309103

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.