Evidence map›Paper›PMID 34571123›Full record

ArticleInternational journal of biological macromolecules2021

Implications derived from S-protein variants of SARS-CoV-2 from six continents.

Sk Sarif Hassan, Kenneth Lundstrom, Debmalya Barh, Raner Jośe Santana Silva, Bruno Silva Andrade, Vasco Azevedo, Pabitra Pal Choudhury, Giorgio Palu, Bruce D Uhal, Ramesh Kandimalla and 14 more

Open access · greenAbstract read
In one paragraph

Article in International journal of biological macromolecules, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
0.8field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it, 12 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 20 institutions in 13 countries.

Sk Sarif HassanDepartment of Mathematics, Pingla Thana Mahavidyalaya, Maligram, Paschim Medinipur 721140, West Bengal, India. Electronic address: sarimif@gmail.com.
Kenneth LundstromPanTherapeutics, Rte de Lavaux 49, CH1095 Lutry, Switzerland.
Debmalya BarhCentre for Genomics and Applied Gene Technology, Institute of Integrative Omics and Applied Biotechnology (IIOAB), Nonakuri, Purba Medinipur, WB, India; Department of Genetics, Ecology and Evolution, Institute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte 31270-901, Brazil. Electronic address: dr.barh@gmail.com.
Raner Jośe Santana SilvaDepartment of Biological Sciences (DCB), Graduate Program in Genetics and Molecular Biology (PPGGBM), State University of Santa Cruz (UESC), Rodovia Ilheus-Itabuna, km 16, 45662-900 Ilheus, BA, Brazil.
Bruno Silva AndradeLaboratory of Bioinformatics and Computational Chemistry, Department of Biological Sciences, State University of Southwest Bahia (UESB), Jequié 45206-190, Brazil. Electronic address: bandrade@uesb.edu.br.
Vasco AzevedoLaborat'orio de Geńetica Celular e Molecular, Departamento de Genetica, Ecologia e Evolucao, Instituto de Ciˆencias Biol'ogicas, Universidade Federal de Minas Gerais, Belo Horizonte CEP 31270-901, Brazil. Electronic address: vascoariston@gmail.com.
Pabitra Pal ChoudhuryApplied Statistics Unit, Indian Statistical Institute, 203 B T Road, Kolkata 700108, India.
Giorgio PaluDepartment of Molecular Medicine, University of Padova, Via Gabelli 63, 35121 Padova, Italy. Electronic address: giorgio.palu@unipd.it.
Bruce D UhalDepartment of Physiology, Michigan State University, East Lansing, MI 48824, USA.
Ramesh KandimallaApplied Biology, CSIR-Indian Institute of Chemical Technology, Uppal Road, Tarnaka, Hyderabad 500007, India; Department of Biochemistry, Kakatiya Medical College, Warangal, Telangana, India.
Murat SeyranDoctoral Studies in Natural and Technical Sciences (SPL 44), University of Vienna, W¨ahringer Straße, A-1090 Vienna, Austria.
Amos LalDivision of Pulmonary and Critical Care Medicine, Mayo Clinic, Rochester, MN, USA.
Samendra P SherchanDepartment of Environmental Health Sciences, Tulane University, New Orleans, LA 70112, USA. Electronic address: sshercha@tulane.edu.
Gajendra Kumar AzadDepartment of Zoology, Patna University, Patna, Bihar, India. Electronic address: gkazad@patnauniversity.ac.in.
Alaa A A AljabaliDepartment of Pharmaceutics and Pharmaceutical Technology, Yarmouk University, Faculty of Pharmacy, Irbid 566, Jordan. Electronic address: alaaj@yu.edu.jo.
Adam M BrufskyUniversity of Pittsburgh School of Medicine, Department of Medicine, Division of Hematology/Oncology, UPMC Hillman Cancer Center, Pittsburgh, PA, USA. Electronic address: brufskyam@upmc.edu.
Ángel Serrano-ArocaBiomaterials and Bioengineering Lab, Centro de Investigaci'on Traslacional San Alberto Magno, Universidad Cat́olica de Valencia San Vicente Ḿartir, c/Guillem de Castro, 94, 46001 Valencia, Spain. Electronic address: angel.serrano@ucv.es.
Parise AdadiDepartment of Food Science, University of Otago, Dunedin 9054, New Zealand.
Tarek Mohamed Abd El-AzizZoology Department, Faculty of Science, Minia University, El-Minia 61519, Egypt; Department of Cellular and Integrative Physiology, University of Texas Health Science Center at San Antonio, San Antonio, TX 78229-3900, USA. Electronic address: mohamedt1@uthscsa.edu.
Elrashdy M RedwanFaculty of Science, Department of Biological Science, King Abdulazizi University, Jeddah 21589, Saudi Arabia; Therapeutic and Protective Proteins Laboratory, Protein Research Department, Genetic Engineering and Biotechnology Research Institute, City for Scientific Research and Technology Applications, New Borg El-Arab, Alexandria 21934, Egypt. Electronic address: lradwan@kau.edu.sa.
Kazuo TakayamaCenter for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto 606-8507, Japan. Electronic address: kazuo.takayama@cira.kyoto-u.ac.jp.
Nima RezaeiResearch Center for Immunodeficiencies, Pediatrics Center of Excellence, Children's Medical Center, Tehran University of Medical Sciences, Tehran, Iran; Network of Immunity in Infection, Malignancy and Autoimmunity (NIIMA), Universal Scientific Education and Research Network (USERN), Stockholm, Sweden. Electronic address: rezaei_nima@tums.ac.ir.
Murtaza TambuwalaSchool of Pharmacy and Pharmaceutical Science, Ulster University, Coleraine BT52 1SA, Northern Ireland, UK. Electronic address: m.tambuwala@ulster.ac.uk.
Vladimir N UverskyDepartment of Molecular Medicine, Morsani College of Medicine, University of South Florida, Tampa, FL 33612, USA; Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and Technology, Institutskiy pereulok, 9, Dolgoprudny, 141700, Russia. Electronic address: vuversky@usf.edu.
Indian Institute of Chemical Technology · INIndian Statistical Institute · INInstitute of Bioinformatics and Applied Biotechnology · INKing Abdulaziz University · SAKyoto University · JPMayo Clinic · USMichigan State University · USMinia University · EGPanthera Corporation · USPatna University · INSouthwest Bahia State University · BRTehran University of Medical Sciences · IRTulane University · USUniversidade Estadual de Santa Cruz · BRUniversidade Federal de Minas Gerais · BRUniversity of Otago · NZUniversity of Padua · ITUniversity of South Florida · USUniversity of Ulster · GBUniversity of Vienna · AT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The spike (S) protein is a critical determinant of the infectivity and antigenicity of SARS-CoV-2. Several mutations in the S protein of SARS-CoV-2 have already been detected, and their effect in immune system evasion and enhanced transmission as a cause of increased morbidity and mortality are being investigated. From pathogenic and epidemiological perspectives, S proteins are of prime interest to researchers. This study focused on the unique variants of S proteins from six continents: Asia, Africa, Europe, Oceania, South America, and North America. In comparison to the other five continents, Africa had the highest percentage of unique S proteins (29.1%). The phylogenetic relationship implies that unique S proteins from North America are significantly different from those of the other five continents. They are most likely to spread to the other geographic locations through international travel or naturally by emerging mutations. It is suggested that restriction of international travel should be considered, and massive vaccination as an utmost measure to combat the spread of the COVID-19 pandemic. It is also further suggested that the efficacy of existing vaccines and future vaccine development must be reviewed with careful scrutiny, and if needed, further re-engineered based on requirements dictated by new emerging S protein variants.

Indexed as

Amino Acid SubstitutionCOVID-19EntropyHumansIsoelectric PointMutationPandemicsPhylogenySpike Glycoprotein, CoronavirusSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2ContinentsInvariant residuesMutationsSARS-CoV-2Spike proteinVaccines

Identifiers

PMID34571123
PMCPMC8462006
OpenAlexW3203222588

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.