Evidence map›Paper›PMID 34570877›Full record

ArticleJournal of animal science2021

Associations of natural variation in the CD163 and other candidate genes on host response of nursery pigs to porcine reproductive and respiratory syndrome virus infection.

Qian Dong, Jenelle Dunkelberger, Kyu-Sang Lim, Joan K Lunney, Christopher K Tuggle, Raymond R R Rowland, Jack C M Dekkers

Open access · bronzeAbstract read
In one paragraph

Article in Journal of animal science, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 31 citations in OpenAlex.

  1. Pig Genome Editing for Agriculture: Achievements and Challenges.International journal of molecular sciences · 2025
    Review
  2. Review
  3. Article
  4. Article
  5. Selection for Resilience in Livestock Production Systems.International journal of molecular sciences · 2024
    Review
  6. Article
  7. Porcine Reproductive and Respiratory Syndrome (PRRS) andAnimals : an open access journal from MDPI · 2023
    Article
  8. Article
  9. Review
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Qian DongDepartment of Animal Science, Iowa State University, Ames, IA 50011, USA.
Jenelle DunkelbergerDepartment of Animal Science, Iowa State University, Ames, IA 50011, USA.
Kyu-Sang LimDepartment of Animal Science, Iowa State University, Ames, IA 50011, USA.
Joan K LunneyUSDA, ARS, BARC, Beltsville, MD 20705, USA.
Christopher K TuggleDepartment of Animal Science, Iowa State University, Ames, IA 50011, USA.
Raymond R R RowlandCollege of Veterinary Medicine, University of Illinois, Urbana, IL 61802, USA.
Jack C M DekkersDepartment of Animal Science, Iowa State University, Ames, IA 50011, USA.
Iowa State University · USAgricultural Research Service · USSt. Jude Children's Research Hospital · USUniversity of Illinois Urbana-Champaign · US

Funding

National Institute of Food and Agriculture 2013-68004-20362
6 · The paper itself

Abstract

Pigs with complete resistance to porcine reproductive and respiratory syndrome (PRRS) virus (PRRSV) have been produced by genetically knocking out the CD163 gene that encodes a receptor of the PRRSV for entry into macrophages. The objectives of this study were to evaluate associations of naturally occurring single nucleotide polymorphisms (SNPs) in the CD163 gene and in three other candidate genes (CD169, RGS16, and TRAF1) with host response to PRRSV-only infection and to PRRS vaccination and PRRSV/porcine circovirus 2b (PCV2b) coinfection. SNPs in the CD163 gene were not included on SNP genotyping panels that were used for previous genome-wide association analyses of these data. An additional objective was to identify the potential genetic interaction of variants at these four candidate genes with a mutation in the GBP5 gene that was previously identified to be associated with host response to PRRSV infection. Finally, the association of SNPs with expression level of the nearby gene was tested. Several SNPs in the CD163, CD169, and RGS16 genes were significantly associated with host response under PRRSV-only and/or PRRSV/PCV2b coinfection. The effects of all SNPs that were significant in the PRRSV-only infection trials depend on genetic background. The effects of some SNPs in the CD163, CD169, and RGS16 genes depend on genotype at the putative causative mutation in the GBP5 gene, which indicates a potential biological interaction of these genes with GBP5. In addition, genome-wide association results for the PRRSV-only infection trials revealed that SNPs located in the CDK5RAP2 or MEGF9 genes, near the TRAF1 gene, had suggestive effects on PRRS viral load, which indicates that these SNPs might contribute to PRRSV neuropathogenesis. In conclusion, natural genetic variants in the CD163, CD169, and RGS16 genes are associated with resistance to PRRSV and/or PCV2b infection and appear to interact with the resistance quantitative trait locus in the GBP5 gene. The identified SNPs can be used to select for increased natural resistance to PRRSV and/or PRRSV-PCV2b coinfection.

Indexed as

Porcine Reproductive and Respiratory SyndromePorcine respiratory and reproductive syndrome virusSwine DiseasesAnimalsAntigens, CDAntigens, Differentiation, MyelomonocyticCD163 AntigenGenome-Wide Association StudyQuantitative Trait LociReceptors, Cell SurfaceSwineAntigens, CDAntigens, Differentiation, MyelomonocyticCD163 AntigenReceptors, Cell SurfaceCD163 geneCD169 genedisease resistancegeneticsporcine reproductive and respiratory syndromeswine

Identifiers

PMID34570877
PMCPMC8557627
OpenAlexW3202538521

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.