Evidence map›Paper›PMID 34570752›Full record

ArticlePLoS genetics2021

A lipoprotein allosterically activates the CwlD amidase during Clostridioides difficile spore formation.

Carolina Alves Feliciano, Brian E Eckenroth, Oscar R Diaz, Sylvie Doublié, Aimee Shen

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.8field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. The small acid-soluble proteins ofbioRxiv : the preprint server for biology · 2024
    Article
  9. Clostridioides difficile Sporulation.Advances in experimental medicine and biology · 2024
    Review
  10. Article
  11. Metal cofactor stabilization by a partner protein is a widespread strategy employed for amidase activation.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Carolina Alves FelicianoDepartment of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, Massachusetts, United States of America.
Brian E EckenrothDepartment of Microbiology and Molecular Genetics, University of Vermont, Burlington, Vermont, United States of America.ORCID 0000-0003-4818-311X
Oscar R DiazDepartment of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, Massachusetts, United States of America.ORCID 0000-0003-4041-2096
Sylvie DoubliéDepartment of Microbiology and Molecular Genetics, University of Vermont, Burlington, Vermont, United States of America.
Aimee ShenDepartment of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, Massachusetts, United States of America.ORCID 0000-0002-9786-5742
Tufts University · USUniversity of Vermont · US

Funding

Tufts Post-Baccalaureate Research Education ProgramR25GM066567 · NIGMS · TUFTS UNIVERSITY BOSTON · PI RIOS, MARIBEL · 2002 to 2024
$5.7M
Regulation of Spore Germination in Clostridioides difficileR01GM108684 · NIGMS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI Aimee Shen · 2014 to 2026
$3.0M
Regulation of spore peptidoglycan modificationR01GM140361 · NIGMS · TUFTS UNIVERSITY BOSTON · PI SHEN, AIMEE · 2021 to 2024
$1.4M
Structural Investigations Critical to Understanding DNA Damage Recognition and Repair in CancerR50CA233185 · NCI · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI Brian E. Eckenroth · 2018 to 2026
$1.2M
NCI NIH HHS R50 CA233185NIGMS NIH HHS R01 GM108684NIGMS NIH HHS R01 GM140361NIGMS NIH HHS R25 GM066567
6 · The paper itself

Abstract

Spore-forming pathogens like Clostridioides difficile depend on germination to initiate infection. During gemination, spores must degrade their cortex layer, which is a thick, protective layer of modified peptidoglycan. Cortex degradation depends on the presence of the spore-specific peptidoglycan modification, muramic-∂-lactam (MAL), which is specifically recognized by cortex lytic enzymes. In C. difficile, MAL production depends on the CwlD amidase and its binding partner, the GerS lipoprotein. To gain insight into how GerS regulates CwlD activity, we solved the crystal structure of the CwlD:GerS complex. In this structure, a GerS homodimer is bound to two CwlD monomers such that the CwlD active sites are exposed. Although CwlD structurally resembles amidase_3 family members, we found that CwlD does not bind Zn2+ stably on its own, unlike previously characterized amidase_3 enzymes. Instead, GerS binding to CwlD promotes CwlD binding to Zn2+, which is required for its catalytic mechanism. Thus, in determining the first structure of an amidase bound to its regulator, we reveal stabilization of Zn2+ co-factor binding as a novel mechanism for regulating bacterial amidase activity. Our results further suggest that allosteric regulation by binding partners may be a more widespread mode for regulating bacterial amidase activity than previously thought.

Indexed as

Allosteric RegulationAmidohydrolasesCatalysisCatalytic DomainChromatography, GelClostridioides difficileCrystallography, X-RayLactamsLipoproteinsMolecular StructureMuramic AcidsProtein BindingSpores, BacterialamidaseAmidohydrolasesLactamsLipoproteinsMuramic Acidsmuramic lactam

Identifiers

PMID34570752
PMCPMC8496864
OpenAlexW3202923724

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.