Evidence map›Paper›PMID 34569936›Full record

ArticleeLife2021

A state space modeling approach to real-time phase estimation.

Anirudh Wodeyar, Mark Schatza, Alik S Widge, Uri T Eden, Mark A Kramer

Abstract read
In one paragraph

Article in eLife, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

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  9. An Adaptable Phase-Tracking System for Parkinsonian Rest Tremor: Design and In-Clinic Feasibility.IEEE journal of translational engineering in health and medicine · 2025
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  16. Site-dependent shaping of field potential waveforms.Cerebral cortex (New York, N.Y. : 1991) · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Anirudh WodeyarMathematics and Statistics, Boston University, Boston, United States.ORCID 0000-0003-2577-5139
Mark SchatzaDepartment of Psychiatry, University of Minnesota, Minneapolis, United States.
Alik S WidgeDepartment of Psychiatry, University of Minnesota, Minneapolis, United States.ORCID 0000-0001-8510-341X
Uri T EdenMathematics and Statistics, Boston University, Boston, United States.
Mark A KramerMathematics and Statistics, Boston University, Boston, United States.

Funding

Implantable Neurostimulators for Control of Oscillatory Brain NetworksR01MH123634 · NIMH · UNIVERSITY OF MINNESOTA · PI SHOARAN, MAHSA, WIDGE, ALIK S. · 2020 to 2024
$6.7M
Circuit Specific Electrical Brain StimulationR01MH119384 · NIMH · UNIVERSITY OF MINNESOTA · PI WIDGE, ALIK S. · 2019 to 2023
$2.4M
Measuring, Modeling, and Modulating Cross-Frequency CouplingR01EB026938 · NIBIB · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI EDEN, URI TZVI, KRAMER, MARK ALAN · 2018 to 2020
$1.0M
NIBIB NIH HHS R01 EB026938NIMH NIH HHS R01 MH119384NIMH NIH HHS R01 MH123634
6 · The paper itself

Abstract

Brain rhythms have been proposed to facilitate brain function, with an especially important role attributed to the phase of low-frequency rhythms. Understanding the role of phase in neural function requires interventions that perturb neural activity at a target phase, necessitating estimation of phase in real-time. Current methods for real-time phase estimation rely on bandpass filtering, which assumes narrowband signals and couples the signal and noise in the phase estimate, adding noise to the phase and impairing detections of relationships between phase and behavior. To address this, we propose a state space phase estimator for real-time tracking of phase. By tracking the analytic signal as a latent state, this framework avoids the requirement of bandpass filtering, separately models the signal and the noise, accounts for rhythmic confounds, and provides credible intervals for the phase estimate. We demonstrate in simulations that the state space phase estimator outperforms current state-of-the-art real-time methods in the contexts of common confounds such as broadband rhythms, phase resets, and co-occurring rhythms. Finally, we show applications of this approach to in vivo data. The method is available as a ready-to-use plug-in for the Open Ephys acquisition system, making it widely available for use in experiments.

Indexed as

ElectroencephalographyModels, NeurologicalAnimalsBrainElectrophysiological PhenomenaHumansRatsEEGhumanLFPneurosciencephaseratreal-timerhythms

Identifiers

PMID34569936
PMCPMC8536256

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.