ArticleG3 (Bethesda, Md.)2021
The Bnapus50K array: a quick and versatile genotyping tool for Brassica napus genomic breeding and research.
Article in G3 (Bethesda, Md.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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Who cites it
11 citing papers in PubMed.
- Genetic and Transcriptomic Analyses of the Purple Coloration Trait in the Inbred Line 7A01 ofPlants (Basel, Switzerland) · 2026Article
- Identification and fine mapping of a locus controlling multi-main-stem trait in Brassica napus.BMC plant biology · 2026Article
- Cloning and functional analysis of the lobed-leaf gene BjA10.LL in Brassica juncea L.Stress biology · 2026Article
- Exploring silique number in Brassica napus L.: Genetic and molecular advances for improving yield.Plant biotechnology journal · 2024Review
- Development of a 50K SNP array for whole-genome analysis and its application in the genetic localization of eggplant (Frontiers in plant science · 2024Article
- Sef1, rapid-cycling Brassica napus for large-scale functional genome research in a controlled environment.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- BnaC01.BIN2, a GSK3-like kinase, modulates plant height and yield potential in Brassica napus.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- Efficient marker-assisted breeding for clubroot resistance in elite Pol-CMS rapeseed varieties by updating theMolecular breeding : new strategies in plant improvement · 2022Article
- Fine mapping of qDB.A03, a QTL for rapeseed branching, and identification of the candidate gene.Molecular genetics and genomics : MGG · 2022Article
- Genetic dissection of branch architecture in oilseed rape (Frontiers in plant science · 2022Article
- Genetic Dissection of Mature Root Characteristics by Genome-Wide Association Studies in Rapeseed (Plants (Basel, Switzerland) · 2021Article
Corrections and comments
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Authors and funding
15 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Rapeseed is a globally cultivated commercial crop, primarily grown for its oil. High-density single nucleotide polymorphism (SNP) arrays are widely used as a standard genotyping tool for rapeseed research, including for gene mapping, genome-wide association studies, germplasm resource analysis, and cluster analysis. Although considerable rapeseed genome sequencing data have been released, DNA arrays are still an attractive choice for providing additional genetic data in an era of high-throughput whole-genome sequencing. Here, we integrated re-sequencing DNA array data (32,216, 304 SNPs) from 505 inbred rapeseed lines, allowing us to develop a sensitive and efficient genotyping DNA array, Bnapus50K, with a more consistent genetic and physical distribution of probes. A total of 42,090 high-quality probes were filtered and synthesized, with an average distance between adjacent SNPs of 8 kb. To improve the practical application potential of this array in rapeseed breeding, we also added 1,618 functional probes related to important agronomic traits such as oil content, disease resistance, male sterility, and flowering time. The additional probes also included those specifically for detecting genetically modified material. These probes show a good detection efficiency and are therefore useful for gene mapping, along with crop variety improvement and identification. The novel Bnapus50K DNA array developed in this study could prove to be a quick and versatile genotyping tool for B. napus genomic breeding and research.
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