Evidence map›Paper›PMID 34562899›Full record

ArticleBiosensors2021

Sirirat Wachiralurpan, Isaratat Phung-On, Narong Chanlek, Supatra Areekit, Kosum Chansiri, Peter A Lieberzeit

Open access · goldAbstract read
In one paragraph

Article in Biosensors, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Detection ofSensors (Basel, Switzerland) · 2022
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Sirirat WachiralurpanMaintenance Technology Center, Institute for Scientific and Technological Research and Services, King Mongkut's University of Technology Thonburi, 126 Prachautit Rd., Bangkok 10140, Thailand.
Isaratat Phung-OnMaintenance Technology Center, Institute for Scientific and Technological Research and Services, King Mongkut's University of Technology Thonburi, 126 Prachautit Rd., Bangkok 10140, Thailand.
Narong ChanlekSynchrotron Light Research Institute (Public Organization), 111 University Avenue, Muang District, Nakhon Ratchasima 30000, Thailand.
Supatra AreekitInnovative Learning Center, Srinakharinwirot University, Sukhumvit 23, Bangkok 10110, Thailand.
Kosum ChansiriCenter of Excellence in Biosensors, Panyananthaphikkhu Chonprathan Medical Center, Srinakharinwirot University, 222 Moo1 Tiwanon Rd., Pakkred District, Nonthaburi 11120, Thailand.
Peter A LieberzeitDepartment of Physical Chemistry, Faculty for Chemistry, University of Vienna, Waehringer Strasse 42, 1090 Vienna, Austria.ORCID 0000-0003-1596-0584
King Mongkut's University of Technology Thonburi · THSrinakharinwirot University · THSynchrotron Light Research Institute · THUniversity of Vienna · AT

Funding

Agricultural Research Development Agency CRP5605021930Thailand Science Research and Innovation 64A306000023
6 · The paper itself

Abstract

Functionalized DNA sequences are promising sensing elements to combine with transducers for bio-sensing specific target microbes. As an application example, this paper demonstrates in situ detection of loop-mediated isothermal amplification products by hybridizing them with thiolated-ssDNA covalently anchored on the electrodes of a quartz crystal microbalance (QCM). Such hybridization leads to a frequency signal, which is suitable for monitoring real-time LAMP amplification based on mass-sensing: it detects interactions between the complementary nucleobases of LAMP products in solution and the thiolated-ssDNA probe sequence on the gold surface. Target DNA LAMP products cause irreversible frequency shifts on the QCM surfaces during hybridization in the kHz range, which result from both changes in mass and charge on the electrode surface. In order to confirm the LAMP assay working in the QCM sensing system at elevated temperature, the sky blue of positive LAMP products solution was achieved by using the Hydroxy Naphthol Blue (HNB) and agarose gel electrophoresis. Since on-QCM sensing of DNA hybridization leads to irreversible sensor responses, this work shows characterization by X-ray photoelectron spectroscopy (XPS) core spectra of S2p, N1s, Mg1s, P2p and C1s. XPS results confirmed that indeed both DNA and by-products of LAMP attached to the surface.

Indexed as

Listeria monocytogenesMolecular Diagnostic TechniquesNucleic Acid Amplification TechniquesQuartz Crystal Microbalance Techniqueshly geneLAMP products analysisListeria monocytogenes (L. monocytogenes)quartz crystal microbalance (QCM)real-time loop-mediated isothermal amplification (real-time LAMP)X-ray photoelectron spectroscopy (XPS)

Identifiers

PMID34562899
PMCPMC8470657
OpenAlexW3198679688

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.