Evidence map›Paper›PMID 34562659›Full record

ArticleBrain stimulation

Multi-scale modeling toolbox for single neuron and subcellular activity under Transcranial Magnetic Stimulation.

Sina Shirinpour, Nicholas Hananeia, James Rosado, Harry Tran, Christos Galanis, Andreas Vlachos, Peter Jedlicka, Gillian Queisser, Alexander Opitz

Open access · goldAbstract read
In one paragraph

Article in Brain stimulation. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 1 pooled it
3.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 1 synthesis or guideline pooled it, 47 citations in OpenAlex.

  1. Pooled it
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  13. A survey on integral equations for bioelectric modeling.Physics in medicine and biology · 2024
    Review
  14. Article
  15. A New Angle on Transcranial Magnetic Stimulation Coil Orientation: A Targeted Narrative Review.Biological psychiatry. Cognitive neuroscience and neuroimaging · 2024
    Review
  16. Article
  17. Electric-field-based dosing for TMS.Imaging neuroscience (Cambridge, Mass.) · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Sina ShirinpourDepartment of Biomedical Engineering, University of Minnesota, Minneapolis, USA. Electronic address: shiri008@umn.edu.
Nicholas HananeiaFaculty of Medicine, ICAR3R - Interdisciplinary Centre for 3Rs in Animal Research, Justus-Liebig-University, Giessen, Germany.
James RosadoDepartment of Mathematics, Temple University, Philadelphia, USA.
Harry TranDepartment of Biomedical Engineering, University of Minnesota, Minneapolis, USA.
Christos GalanisDepartment of Neuroanatomy, Institute of Anatomy and Cell Biology, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Andreas VlachosDepartment of Neuroanatomy, Institute of Anatomy and Cell Biology, Faculty of Medicine, University of Freiburg, Freiburg, Germany; Bernstein Center Freiburg, University of Freiburg, Freiburg, Germany; Center Brain Links Brain Tools, University of Freiburg, Freiburg, Germany; Center for Basics in Neuromodulation, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Peter JedlickaFaculty of Medicine, ICAR3R - Interdisciplinary Centre for 3Rs in Animal Research, Justus-Liebig-University, Giessen, Germany.
Gillian QueisserDepartment of Mathematics, Temple University, Philadelphia, USA.
Alexander OpitzDepartment of Biomedical Engineering, University of Minnesota, Minneapolis, USA. Electronic address: aopitz@umn.edu.
University of Minnesota · USJustus-Liebig-Universität Gießen · DETemple University · USUniversity of Freiburg · DE

Funding

Investigating the molecular, cellular and circuit effects of transcranial magnetic stimulationR01NS109498 · NINDS · UNIVERSITY OF MINNESOTA · PI FALCHIER, ARNAUD Y, OPITZ, ALEXANDER · 2019 to 2022
$3.2M
An open software solution to integrate non-invasive brain stimulation with functional imaging dataRF1MH117428 · NIMH · UNIVERSITY OF MINNESOTA · PI OPITZ, ALEXANDER · 2019 to 2019
$1.4M
CRCNS: Collaboration toward an experimentally validated multiscale model of rTMSR01MH118930 · NIMH · TEMPLE UNIV OF THE COMMONWEALTH · PI QUEISSER, GILLIAN · 2018 to 2020
$497k
NIMH NIH HHS R01 MH118930NIMH NIH HHS RF1 MH117428NINDS NIH HHS R01 NS109498
6 · The paper itself

Abstract

backgroundTranscranial Magnetic Stimulation (TMS) is a widely used non-invasive brain stimulation method. However, its mechanism of action and the neural response to TMS are still poorly understood. Multi-scale modeling can complement experimental research to study the subcellular neural effects of TMS. At the macroscopic level, sophisticated numerical models exist to estimate the induced electric fields. However, multi-scale computational modeling approaches to predict TMS cellular and subcellular responses, crucial to understanding TMS plasticity inducing protocols, are not available so far.

objectiveWe develop an open-source multi-scale toolbox Neuron Modeling for TMS (NeMo-TMS) to address this problem.

methodsNeMo-TMS generates accurate neuron models from morphological reconstructions, couples them to the external electric fields induced by TMS, and simulates the cellular and subcellular responses of single-pulse and repetitive TMS.

resultsWe provide examples showing some of the capabilities of the toolbox.

conclusionNeMo-TMS toolbox allows researchers a previously not available level of detail and precision in realistically modeling the physical and physiological effects of TMS.

Indexed as

NeuronsTranscranial Magnetic StimulationBrainComputer SimulationHeadCalcium simulationDendritesElectric field simulationNeuron compartmental modelingSynaptic plasticityThree-dimensional reconstructionsTranscranial magnetic stimulation

Identifiers

PMID34562659
PMCPMC8608742
OpenAlexW3202253323

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.