Evidence map›Paper›PMID 34562584›Full record

ArticleMethods (San Diego, Calif.)2022

A network representation approach for COVID-19 drug recommendation.

Haifeng Liu, Hongfei Lin, Chen Shen, Liang Yang, Yuan Lin, Bo Xu, Zhihao Yang, Jian Wang, Yuanyuan Sun

Abstract read
In one paragraph

Article in Methods (San Diego, Calif.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Haifeng LiuDepartment of Computer Science, Dalian University of Technology, LiaoNing, China. Electronic address: liuhaifeng@mail.dlut.edu.cn.
Hongfei LinDepartment of Computer Science, Dalian University of Technology, LiaoNing, China. Electronic address: hflin@dlut.edu.cn.
Chen ShenDepartment of Computer Science, Dalian University of Technology, LiaoNing, China. Electronic address: shenchenioi@mail.dlut.edu.cn.
Liang YangDepartment of Computer Science, Dalian University of Technology, LiaoNing, China. Electronic address: liang@dlut.edu.cn.
Yuan LinFaculty of Humanities and Social Sciences, Dalian University of Technology, LiaoNing, China. Electronic address: zhlin@dlut.edu.cn.
Bo XuDepartment of Computer Science, Dalian University of Technology, LiaoNing, China. Electronic address: xubo@dlut.edu.cn.
Zhihao YangDepartment of Computer Science, Dalian University of Technology, LiaoNing, China. Electronic address: yangzh@dlut.edu.cn.
Jian WangDepartment of Computer Science, Dalian University of Technology, LiaoNing, China. Electronic address: wangjian@dlut.edu.cn.
Yuanyuan SunDepartment of Computer Science, Dalian University of Technology, LiaoNing, China. Electronic address: syuan@dlut.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The coronavirus disease 2019 (COVID-19) has outbreak since early December 2019, and COVID-19 has caused over 100 million cases and 2 million deaths around the world. After one year of the COVID-19 outbreak, there is no certain and approve medicine against it. Drug repositioning has become one line of scientific research that is being pursued to develop an effective drug. However, due to the lack of COVID-19 data, there is still no specific drug repositioning targeting the COVID-19. In this paper, we propose a framework for COVID-19 drug repositioning. This framework has several advantages that can be exploited: one is that a local graph aggregating representation is used across a heterogeneous network to address the data sparsity problem; another is the multi-hop neighbors of the heterogeneous graph are aggregated to recall as many COVID-19 potential drugs as possible. Our experimental results show that our COVDR framework performs significantly better than baseline methods, and the docking simulation verifies that our three potential drugs have the ability to against COVID-19 disease.

Indexed as

COVID-19Pharmaceutical PreparationsAntiviral AgentsDrug RepositioningHumansMolecular Docking SimulationSARS-CoV-2Antiviral AgentsPharmaceutical PreparationsCOVID-19Drug repositioningGraph neural networkRecommendation systemSARS-CoV-2

Identifiers

PMID34562584
PMCPMC8458160

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.