Evidence map›Paper›PMID 34562454›Full record

ArticleThe Journal of biological chemistry2021

DNA-PKcs kinase activity stabilizes the transcription factor Egr1 in activated immune cells.

Zachary J Waldrip, Lyle Burdine, David K Harrison, Ana Clara Azevedo-Pouly, Aaron J Storey, Olivia G Moffett, Samuel G Mackintosh, Marie Schluterman Burdine

Open access · goldAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Secrets of DNA-PKcs beyond DNA repair.NPJ precision oncology · 2024
    Review
  9. Article
  10. Review
  11. Article
  12. Science advances · 2023
    Article
  13. Article
  14. Review
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Zachary J WaldripDivision of Surgical Research, University of Arkansas for Medical Sciences, Little Rock, Arkansas, USA; Center for Translational Pediatric Research, Arkansas Children's Research Institute, Little Rock, Arkansas, USA.
Lyle BurdineDivision of Surgical Research, University of Arkansas for Medical Sciences, Little Rock, Arkansas, USA; Department of Transplant Surgery, University of Arkansas for Medical Sciences, Little Rock, Arkansas, USA.
David K HarrisonDivision of Surgical Research, University of Arkansas for Medical Sciences, Little Rock, Arkansas, USA; Center for Translational Pediatric Research, Arkansas Children's Research Institute, Little Rock, Arkansas, USA.
Ana Clara Azevedo-PoulyDivision of Surgical Research, University of Arkansas for Medical Sciences, Little Rock, Arkansas, USA; Center for Translational Pediatric Research, Arkansas Children's Research Institute, Little Rock, Arkansas, USA.
Aaron J StoreyDepartment of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, Arkansas, USA.
Olivia G MoffettCollege of Medicine, University of Arkansas for Medical Sciences, Little Rock, Arkansas, USA.
Samuel G MackintoshDepartment of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, Arkansas, USA.
Marie Schluterman BurdineDivision of Surgical Research, University of Arkansas for Medical Sciences, Little Rock, Arkansas, USA; Center for Translational Pediatric Research, Arkansas Children's Research Institute, Little Rock, Arkansas, USA. Electronic address: MSBurdine@uams.edu.
University of Arkansas for Medical Sciences · USArkansas Children's Hospital · US

Funding

Translational Regulation in Normal Erythropoiesis and Diamond Blackfan AnemiaP20GM121293 · NIGMS · ARKANSAS CHILDREN'S HOSPITAL RES INST · PI Alan Tackett, Sean D. Taverna · 2017 to 2026
$27.6M
Expanding Translational Research in ArkansasUL1TR003107 · NCATS · UNIV OF ARKANSAS FOR MED SCIS · PI JAMES, LAURA P · 2019 to 2023
$21.6M
J. NRSA TrainingTL1TR003109 · NCATS · UNIV OF ARKANSAS FOR MED SCIS · PI SEXTON, KEVIN WAYNE · 2019 to 2023
$1.5M
NCATS NIH HHS TL1 TR003109NCATS NIH HHS UL1 TR003107NIGMS NIH HHS P20 GM121293
6 · The paper itself

Abstract

DNA-dependent protein kinase catalytic subunit (DNA-PKcs) is known primarily for its function in DNA double-stranded break repair and nonhomologous end joining (NHEJ). However, DNA-PKcs also has a critical yet undefined role in immunity impacting both myeloid and lymphoid cell lineages spurring interest in targeting DNA-PKcs for therapeutic strategies in immune-related diseases. To gain insight into the function of DNA-PKcs within immune cells, we performed a quantitative phosphoproteomic screen in T cells to identify phosphorylation targets of DNA-PKcs. Our results indicate that DNA-PKcs phosphorylates the transcription factor Egr1 (early growth response protein 1) at serine 301. Expression of Egr1 is induced early upon T cell activation and dictates T cell response by modulating expression of cytokines and key costimulatory molecules such as IL (interleukin) 2, IL6, IFNγ, and NFκB. Inhibition of DNA-PKcs by treatment with a DNA-PKcs specific inhibitor NU7441 or shRNA knockdown increased proteasomal degradation of Egr1. Mutation of serine 301 to alanine via CRISPR-Cas9 reduced EGR1 protein expression and decreased Egr1-dependent transcription of IL2 in activated T cells. Our findings identify DNA-PKcs as a critical intermediary link between T cell activation and T cell fate and a novel phosphosite involved in regulating Egr1 activity.

Indexed as

Lymphocyte ActivationAnimalsCytokinesDNA-Activated Protein KinaseDNA-Binding ProteinsEarly Growth Response Protein 1HumansJurkat CellsMiceMice, Inbred BALB CMice, Inbred NODMice, SCIDMutation, MissenseProtein StabilityT-LymphocytesTranscription, GeneticCytokinesDNA-Activated Protein KinaseDNA-Binding ProteinsEarly Growth Response Protein 1EGR1 protein, humanEgr1 protein, mousePRKDC protein, humanPrkdc protein, mouseDNA-dependent protein kinase catalytic subunit (DNA-PKcs)early growth response protein 1 (EGR1)enzyme inhibitorIL2immediate early response gene (IEG)phorbol esterphosphoproteomicsT cellstranscription factor

Identifiers

PMID34562454
PMCPMC8551498
OpenAlexW3200555265

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.