Evidence map›Paper›PMID 34562249›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2022

Cell-Based Assays for Smoothened Ubiquitination and Sumoylation.

Yuhong Han, Jin Jiang

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Yuhong HanDepartment of Molecular Biology, UT Southwestern Medical Center at Dallas, Dallas, TX, USA.
Jin JiangDepartment of Molecular Biology, UT Southwestern Medical Center at Dallas, Dallas, TX, USA. Jin.Jiang@UTSouthwestern.edu.

Funding

Cell signaling in development and regenerationR35GM118063 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI Jin Jiang · 2016 to 2026
$9.4M
NIGMS NIH HHS R35 GM118063
6 · The paper itself

Abstract

The Hedgehog (Hh) family of secreted proteins governs embryonic development and adult tissue homeostasis by regulating the abundance, localization, and activity of the GPCR family protein Smoothened (Smo). Smo trafficking and subcellular accumulation are controlled by multiple posttranslational modifications (PTMs) including phosphorylation, ubiquitination, and sumoylation, which appears to be conserved from Drosophila to mammals. Smo ubiquitination is dynamically regulated by E3 ubiquitin ligases and deubiquitinases (dubs) and is opposed by Hh signaling. By contrast, Smo sumoylation is stimulated by Hh, which counteracts Smo ubiquitination by recruiting the dub USP8. We describe cell-base assays for Smo ubiquitination and its regulation by Hh and the E3 ligases in Drosophila. We also describe assays for Smo sumoylation in both Drosophila and mammalian cultured cells.

Indexed as

SumoylationUbiquitinationAnimalsDrosophilaDrosophila ProteinsHedgehog ProteinsMammalsReceptors, G-Protein-CoupledSmoothened ReceptorUbiquitin-Protein LigasesDrosophila ProteinsHedgehog ProteinsReceptors, G-Protein-CoupledSmoothened ReceptorUbiquitin-Protein LigasesCul4DDB1GβHedgehogNedd4SmoSmurfSumoylationUbiquitinationUlp1USP8

Identifiers

PMID34562249
PMCPMC8942085

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.