Evidence map›Paper›PMID 34562115›Full record

ArticleApplied microbiology and biotechnology2021

LysR-type transcriptional regulator FinR is required for phenazine and pyrrolnitrin biosynthesis in biocontrol Pseudomonas chlororaphis strain G05.

Lijuan Chen, Yanhua Wang, Jing Miao, Qijun Wang, Zili Liu, Wenqi Xie, Xinsheng Liu, Zhibin Feng, Shiwei Cheng, Xiaoyan Chi and 1 more

Abstract read
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In one paragraph

Article in Applied microbiology and biotechnology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.1field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Lijuan Chen *Affiliated Hospital of Ludong University, Yantai, 264025, China.
Yanhua Wang *The Department of Applied and Environmental Microbiology, School of Life Sciences, Ludong University, Yantai, 264000, China.
Jing Miao *The Department of Applied and Environmental Microbiology, School of Life Sciences, Ludong University, Yantai, 264000, China.
Qijun WangThe Department of Applied and Environmental Microbiology, School of Life Sciences, Ludong University, Yantai, 264000, China.
Zili LiuThe Department of Applied and Environmental Microbiology, School of Life Sciences, Ludong University, Yantai, 264000, China.
Wenqi XieThe Department of Applied and Environmental Microbiology, School of Life Sciences, Ludong University, Yantai, 264000, China.
Xinsheng LiuAffiliated Hospital of Ludong University, Yantai, 264025, China.
Zhibin FengThe Department of Applied and Environmental Microbiology, School of Life Sciences, Ludong University, Yantai, 264000, China.
Shiwei ChengThe Department of Applied and Environmental Microbiology, School of Life Sciences, Ludong University, Yantai, 264000, China.
Xiaoyan ChiThe Department of Applied and Environmental Microbiology, School of Life Sciences, Ludong University, Yantai, 264000, China. chixiaoyan@ldu.edu.cn.
Yihe GeThe Department of Applied and Environmental Microbiology, School of Life Sciences, Ludong University, Yantai, 264000, China. geyihe@ldu.edu.cn.ORCID http://orcid.org/0000-0002-7938-8292
Ludong University · CN

Funding

natural science foundation of shandong province ZR2020MC012
6 · The paper itself

Abstract

Phenazine-1-carboxylic acid and pyrrolnitrin, the two secondary metabolites produced by Pseudomonas chlororaphis G05, serve as biocontrol agents that mainly contribute to the growth repression of several fungal phytopathogens. Although some regulators of phenazine-1-carboxylic acid biosynthesis have been identified, the regulatory pathway involving phenazine-1-carboxylic acid synthesis is not fully understood. We isolated a white conjugant G05W03 on X-Gal-containing LB agar during our screening of novel regulator candidates using transposon mutagenesis with a fusion mutant G05Δphz::lacZ as a recipient. By cloning of DNA adjacent to the site of the transposon insertion, we revealed that a LysR-type transcriptional regulator (LTTR) gene, finR, was disrupted in the conjugant G05W03. To confirm the regulatory function of FinR, we constructed the finR-knockout mutant G05ΔfinR, G05Δphz::lacZΔfinR, and G05Δprn::lacZΔfinR, using the wild-type strain G05 and its fusion mutant derivatives as recipient strains, respectively. We found that the expressions of phz and prn operons were dramatically reduced in the finR-deleted mutant. With quantification of the production of antifungal metabolites biosynthesized by the finR-negative strain G05ΔfinR, it was shown that FinR deficiency also led to decreased yield of phenazine-1-carboxylic acid and pyrrolnitrin. In addition, the pathogen inhibition assay confirmed that the production of phenazine-1-carboxylic acid was severely reduced in the absence of FinR. Transcriptional fusions and qRT-PCR verified that FinR could positively govern the transcription of the phz and prn operons. Taken together, FinR is required for antifungal metabolite biosynthesis and crop protection against some fungal pathogens.Key points• A novel regulator FinR was identified by transposon mutagenesis.• FinR regulates antifungal metabolite production.• FinR regulates the phz and prn expression by binding to their promoter regions.

Indexed as

Pseudomonas chlororaphisPyrrolnitrinBacterial ProteinsGene Expression Regulation, BacterialOperonPhenazinesBacterial ProteinsPhenazinesPyrrolnitrinFinRPhenazinesPseudomonas chlororaphisPyrrolnitrinRegulation

Identifiers

PMID34562115
OpenAlexW3200073601

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.