Evidence map›Paper›PMID 34558175›Full record

ArticleSmall (Weinheim an der Bergstrasse, Germany)2021

Label-Free Identification of Single Mononucleotides by Nanoscale Electrophoresis.

Junseo Choi, Zheng Jia, Ramin Riahipour, Collin J McKinney, Charuni A Amarasekara, Kumuditha M Weerakoon-Ratnayake, Steven A Soper, Sunggook Park

Open access · greenAbstract read
In one paragraph

Article in Small (Weinheim an der Bergstrasse, Germany), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Integrated In-Plane Nanofluidic Devices for Resistive-Pulse Sensing.Annual review of analytical chemistry (Palo Alto, Calif.) · 2024
    Review
  5. Article
  6. Article
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  8. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Junseo ChoiDepartment of Mechanical Engineering, Louisiana State University, Baton Rouge, LA, 70803, USA.
Zheng JiaDepartment of Mechanical Engineering, Louisiana State University, Baton Rouge, LA, 70803, USA.
Ramin RiahipourDepartment of Mechanical Engineering, Louisiana State University, Baton Rouge, LA, 70803, USA.
Collin J McKinneyCenter of Bio-Modular Multiscale Systems for Precision Medicine, Lawrence, KS, 66045, USA.
Charuni A AmarasekaraCenter of Bio-Modular Multiscale Systems for Precision Medicine, Lawrence, KS, 66045, USA.
Kumuditha M Weerakoon-RatnayakeCenter of Bio-Modular Multiscale Systems for Precision Medicine, Lawrence, KS, 66045, USA.
Steven A SoperCenter of Bio-Modular Multiscale Systems for Precision Medicine, Lawrence, KS, 66045, USA.
Sunggook ParkDepartment of Mechanical Engineering, Louisiana State University, Baton Rouge, LA, 70803, USA.ORCID 0000-0003-0424-6318
Louisiana State University · USUniversity of Kansas · USUniversity of North Carolina at Chapel Hill · US

Funding

Using Integrated Omics to Identify Dysfunctional Genetic Mechanisms Influencing Schizophrenia and Sleep DisturbancesP20GM130423 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI Kalyani Pyaram, Steven Allan Soper · 2019 to 2026
$21.5M
Single-Molecule Processing: Detection and Identification of Single DNAs, RNAs, and Proteins using Immobilized Nanoscale Enzymatic Reactors (INERs) and Nanoscale ElectrophoresisP41EB020594 · NIBIB · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Sunggook Park · 2015 to 2026
$15.2M
NIBIB NIH HHS P41 EB020594NIGMS NIH HHS P20 GM130423
6 · The paper itself

Abstract

Nanoscale electrophoresis allows for unique separations of single molecules, such as DNA/RNA nucleobases, and thus has the potential to be used as single molecular sensors for exonuclease sequencing. For this to be envisioned, label-free detection of the nucleotides to determine their electrophoretic mobility (i.e., time-of-flight, TOF) for highly accurate identification must be realized. Here, for the first time a novel nanosensor is shown that allows discriminating four 2-deoxyribonucleoside 5'-monophosphates, dNMPs, molecules in a label-free manner by nanoscale electrophoresis. This is made possible by positioning two sub-10 nm in-plane pores at both ends of a nanochannel column used for nanoscale electrophoresis and measuring the longitudinal transient current during translocation of the molecules. The dual nanopore TOF sensor with 0.5, 1, and 5 µm long nanochannel column lengths discriminates different dNMPs with a mean accuracy of 55, 66, and 94%, respectively. This nanosensor format can broadly be applicable to label-free detection and discrimination of other single molecules, vesicles, and particles by changing the dimensions of the nanochannel column and in-plane nanopores and integrating different pre- and postprocessing units to the nanosensor. This is simple to accomplish because the nanosensor is contained within a fluidic network made in plastic via replication.

Indexed as

NanoporesNucleotidesDNAElectrophoresisNanotechnologyDNANucleotidesidentification of mononucleotidesin-plane nanopore sensingmolecular time-of-flightnanoimprint lithographynanoscale electrophoresispolymer nanofluidic biosensors

Identifiers

PMID34558175
PMCPMC8542607
OpenAlexW3200094841

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.