Evidence map›Paper›PMID 34556859›Full record

ArticleNature chemical biology2021

ATP-competitive partial antagonists of the IRE1α RNase segregate outputs of the UPR.

Hannah C Feldman, Rajarshi Ghosh, Vincent C Auyeung, James L Mueller, Jae-Hong Kim, Zachary E Potter, Venkata N Vidadala, B Gayani K Perera, Alina Olivier, Bradley J Backes and 3 more

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
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  13. Selective inhibitors of SARM1 targeting an allosteric cysteine in the autoregulatory ARM domain.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  14. Small-molecule discovery in the pancreatic beta cell.Current opinion in chemical biology · 2022
    Review
  15. Conformation-tunable ATP-competitive kinase inhibitors.Chemical communications (Cambridge, England) · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Hannah C FeldmanDepartment of Chemistry, University of Washington, Seattle, WA, USA.
Rajarshi GhoshDepartment of Medicine, University of California, San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-5780-8241
Vincent C AuyeungDepartment of Medicine, University of California, San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0001-6273-1595
James L MuellerDepartment of Medicine, University of California, San Francisco, San Francisco, CA, USA.
Jae-Hong KimDepartment of Medicine, University of California, San Francisco, San Francisco, CA, USA.
Zachary E PotterDepartment of Chemistry, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-9063-7923
Venkata N VidadalaDepartment of Chemistry, University of Washington, Seattle, WA, USA.
B Gayani K PereraDepartment of Chemistry, University of Washington, Seattle, WA, USA.
Alina OlivierDepartment of Medicine, University of California, San Francisco, San Francisco, CA, USA.
Bradley J BackesDepartment of Medicine, University of California, San Francisco, San Francisco, CA, USA.
Julie ZikhermanDepartment of Medicine, University of California, San Francisco, San Francisco, CA, USA.
Feroz R PapaDepartment of Medicine, University of California, San Francisco, San Francisco, CA, USA. feroz.papa@ucsf.edu.ORCID http://orcid.org/0000-0002-3684-9108
Dustin J MalyDepartment of Chemistry, University of Washington, Seattle, WA, USA. djmaly@uw.edu.ORCID http://orcid.org/0000-0003-0094-0177
University of California, San Francisco · USUniversity of Washington · USQB3 · US

Funding

Neurpsychopharmacology-Multidisciplinary TrainingT32AA007456 · NIAAA · SCRIPPS RESEARCH INSTITUTE, THE · PI MARISA ROBERTO · 1985 to 2026
$13.4M
Pharmacological Validation of IRE1 for Diabetes MellitusR01DK100623 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BACKES, BRADLEY J, MALY, DUSTIN J · 2014 to 2022
$4.6M
Interventional Targeting of the IRE1alpha-TGFbeta signaling loop in pulmonary fibrosisR01HL145037 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PAPA, FEROZ R, SHEPPARD, DEAN · 2019 to 2022
$3.0M
Partial Antagonists of IRE1 RNase—‘PAIR’s—to treat Type 1 DiabetesU01DK123609 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MALY, DUSTIN J, PAPA, FEROZ R · 2019 to 2022
$2.9M
Interrogation of the Roles of Tyrosine Kinases in the Unfolded Protein ResponseR01DK116064 · NIDDK · UNIVERSITY OF WASHINGTON · PI MALY, DUSTIN J, PAPA, FEROZ R · 2018 to 2021
$2.2M
Nuclear Receptors in B Cell Tolerance and Humoral Immune ResponsesR01AI148487 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ZIKHERMAN, JULIE · 2020 to 2024
$2.0M
Dissecting unique functions of IgM and IgD BCRs in tolerance and autoimmunityR01AR069520 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ZIKHERMAN, JULIE · 2016 to 2020
$1.7M
IRE1α mediated dysregulation of the pulmonary epithelium in lung fibrosisK08HL157654 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI AUYEUNG, VINCENT CHURK-MAN · 2021 to 2025
$874k
NHLBI NIH HHS K08 HL157654NHLBI NIH HHS R01 HL145037NIAAA NIH HHS T32 AA007456NIAID NIH HHS R01 AI148487NIAMS NIH HHS R01 AR069520NIDDK NIH HHS R01 DK100623NIDDK NIH HHS R01 DK116064NIDDK NIH HHS U01 DK123609
6 · The paper itself

Abstract

The unfolded protein response (UPR) homeostatically matches endoplasmic reticulum (ER) protein-folding capacity to cellular secretory needs. However, under high or chronic ER stress, the UPR triggers apoptosis. This cell fate dichotomy is promoted by differential activation of the ER transmembrane kinase/endoribonuclease (RNase) IRE1α. We previously found that the RNase of IRE1α can be either fully activated or inactivated by ATP-competitive kinase inhibitors. Here we developed kinase inhibitors, partial antagonists of IRE1α RNase (PAIRs), that partially antagonize the IRE1α RNase at full occupancy. Biochemical and structural studies show that PAIRs promote partial RNase antagonism by intermediately displacing the helix αC in the IRE1α kinase domain. In insulin-producing β-cells, PAIRs permit adaptive splicing of Xbp1 mRNA while quelling destructive ER mRNA endonucleolytic decay and apoptosis. By preserving Xbp1 mRNA splicing, PAIRs allow B cells to differentiate into immunoglobulin-producing plasma cells. Thus, an intermediate RNase-inhibitory 'sweet spot', achieved by PAIR-bound IRE1α, captures a desirable conformation for drugging this master UPR sensor/effector.

Indexed as

Adenosine TriphosphateEndoribonucleasesHumansModels, MolecularMolecular StructureProtein Kinase InhibitorsProtein Serine-Threonine KinasesProtein UnfoldingAdenosine TriphosphateEndoribonucleasesERN1 protein, humanProtein Kinase InhibitorsProtein Serine-Threonine Kinases

Identifiers

PMID34556859
PMCPMC8551014
OpenAlexW3200824716

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.