Evidence map›Paper›PMID 34556817›Full record

ArticleThe ISME journal2022

Discovery and characterization of UipA, a uranium- and iron-binding PepSY protein involved in uranium tolerance by soil bacteria.

Nicolas Gallois, Béatrice Alpha-Bazin, Nicolas Bremond, Philippe Ortet, Mohamed Barakat, Laurie Piette, Abbas Mohamad Ali, David Lemaire, Pierre Legrand, Nicolas Theodorakopoulos and 7 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in The ISME journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 1 country.

Nicolas GalloisAix Marseille Université, CEA, CNRS, BIAM, 13108, Saint Paul-Lez-Durance, France.ORCID http://orcid.org/0000-0003-4172-8359
Béatrice Alpha-BazinDépartement Médicaments et Technologies pour la Santé (DMTS), Université Paris-Saclay, CEA, INRAE, SPI, 30200, Bagnols-sur-Cèze, France.
Nicolas BremondAix Marseille Université, CEA, CNRS, BIAM, 13108, Saint Paul-Lez-Durance, France.
Philippe OrtetAix Marseille Université, CEA, CNRS, BIAM, 13108, Saint Paul-Lez-Durance, France.ORCID http://orcid.org/0000-0002-2648-8978
Mohamed BarakatAix Marseille Université, CEA, CNRS, BIAM, 13108, Saint Paul-Lez-Durance, France.
Laurie PietteAix Marseille Université, CEA, CNRS, BIAM, 13108, Saint Paul-Lez-Durance, France.
Abbas Mohamad AliAix Marseille Université, CEA, CNRS, BIAM, 13108, Saint Paul-Lez-Durance, France.
David LemaireAix Marseille Université, CEA, CNRS, BIAM, 13108, Saint Paul-Lez-Durance, France.
Pierre LegrandSynchrotron SOLEIL. L'Orme des Merisiers Saint-Aubin. BP 48, 91192, Gif-sur-Yvette, France.ORCID http://orcid.org/0000-0003-2431-2255
Nicolas TheodorakopoulosAix Marseille Université, CEA, CNRS, BIAM, 13108, Saint Paul-Lez-Durance, France.
Magali FlorianiIRSN, PSE-ENV/SRTE/LECO, B.P. 3, 13115, Saint Paul-lez-Durance, Cedex, France.ORCID http://orcid.org/0000-0001-5461-0486
Laureline FévrierIRSN, PSE-ENV/SRTE/LR2T, B.P. 3, 13115, Saint Paul-lez-Durance, Cedex, France.ORCID http://orcid.org/0000-0002-5274-6846
Christophe Den AuwerUniversité Côte d'Azur, CNRS, ICN, 06108, Nice, France.ORCID http://orcid.org/0000-0003-2880-0280
Pascal ArnouxAix Marseille Université, CEA, CNRS, BIAM, 13108, Saint Paul-Lez-Durance, France.
Catherine BerthomieuAix Marseille Université, CEA, CNRS, BIAM, 13108, Saint Paul-Lez-Durance, France.
Jean ArmengaudDépartement Médicaments et Technologies pour la Santé (DMTS), Université Paris-Saclay, CEA, INRAE, SPI, 30200, Bagnols-sur-Cèze, France.ORCID http://orcid.org/0000-0003-1589-445X
Virginie ChaponAix Marseille Université, CEA, CNRS, BIAM, 13108, Saint Paul-Lez-Durance, France. virginie.chapon@cea.fr.ORCID http://orcid.org/0000-0002-2365-3464
Centre National de la Recherche Scientifique · FRInstitut de Radioprotection et de Sûreté Nucléaire · FRCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FRSynchrotron soleil · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Uranium is a naturally occurring radionuclide. Its redistribution, primarily due to human activities, can have adverse effects on human and non-human biota, which poses environmental concerns. The molecular mechanisms of uranium tolerance and the cellular response induced by uranium exposure in bacteria are not yet fully understood. Here, we carried out a comparative analysis of four actinobacterial strains isolated from metal and radionuclide-rich soils that display contrasted uranium tolerance phenotypes. Comparative proteogenomics showed that uranyl exposure affects 39-47% of the total proteins, with an impact on phosphate and iron metabolisms and membrane proteins. This approach highlighted a protein of unknown function, named UipA, that is specific to the uranium-tolerant strains and that had the highest positive fold-change upon uranium exposure. UipA is a single-pass transmembrane protein and its large C-terminal soluble domain displayed a specific, nanomolar binding affinity for UO

Indexed as

UraniumBacteriaIronIron-Binding ProteinsSoilIronIron-Binding ProteinsSoilUranium

Identifiers

PMID34556817
PMCPMC8857325
OpenAlexW3200672587

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.