Evidence map›Paper›PMID 34556700›Full record

Observational studyScientific reports2021

Identification of early and intermediate biomarkers for ARDS mortality by multi-omic approaches.

S Y Liao, N G Casanova, C Bime, S M Camp, H Lynn, Joe G N Garcia

Abstract readObservational Study
In one paragraph

Observational study in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Trial
  2. Diminished plasma levels of GPIb-Frontiers in medicine · 2026
    Trial
  3. Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. Predictive modeling of ARDS mortality integrating biomarker/cytokine, clinical and metabolomic data.Translational research : the journal of laboratory and clinical medicine · 2025
    Article
  9. Review
  10. Review
  11. Article
  12. Review
  13. Observational
  14. Article
  15. Article
  16. Article
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  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

S Y LiaoDepartment of Medicine, National Jewish Health, Denver, CO, USA.
N G CasanovaThe University of Arizona Health Sciences, 1501 N. Campbell Ave, PO Box 245035, Tucson, AZ, 85724, USA.
C BimeThe University of Arizona Health Sciences, 1501 N. Campbell Ave, PO Box 245035, Tucson, AZ, 85724, USA.
S M CampThe University of Arizona Health Sciences, 1501 N. Campbell Ave, PO Box 245035, Tucson, AZ, 85724, USA.
H LynnCedars-Sinai Medical Center, Pulmonary Division, Los Angeles, CA, USA.
Joe G N GarciaThe University of Arizona Health Sciences, 1501 N. Campbell Ave, PO Box 245035, Tucson, AZ, 85724, USA. skipgarcia@email.arizona.edu.

Funding

Structure-Function Analysis of nmMLCK in EC Barrier ResponsesP01HL126609 · NHLBI · UNIVERSITY OF FLORIDA · PI Joe G. N. Garcia · 2016 to 2026
$24.4M
Protein Chemistry & Biophysics CoreP01HL134610 · NHLBI · UNIVERSITY OF ARIZONA · PI BLACK, STEPHEN M · 2018 to 2022
$11.6M
Translational Approaches to Health Disparities in Lung, Sleep, and PandemicsR25HL126140 · NHLBI · UNIVERSITY OF ARIZONA · PI FRANCISCO A MORENO, JANKO Z. NIKOLICH · 2014 to 2026
$4.6M
Novel Therapeutic Antibody Targeting of Extracellular NAMPT in Ventilator-Induced Lung Injury (VILI)R42HL145930 · NHLBI · AQUALUNG THERAPEUTICS CORP. · PI GARCIA, JOE G. N. · 2019 to 2021
$1.7M
NHLBI NIH HHS P01 HL126609NHLBI NIH HHS P01 HL134610NHLBI NIH HHS R25 HL126140NHLBI NIH HHS R42 HL145930
6 · The paper itself

Abstract

The lack of successful clinical trials in acute respiratory distress syndrome (ARDS) has highlighted the unmet need for biomarkers predicting ARDS mortality and for novel therapeutics to reduce ARDS mortality. We utilized a systems biology multi-"omics" approach to identify predictive biomarkers for ARDS mortality. Integrating analyses were designed to differentiate ARDS non-survivors and survivors (568 subjects, 27% overall 28-day mortality) using datasets derived from multiple 'omics' studies in a multi-institution ARDS cohort (54% European descent, 40% African descent). 'Omics' data was available for each subject and included genome-wide association studies (GWAS, n = 297), RNA sequencing (n = 93), DNA methylation data (n = 61), and selective proteomic network analysis (n = 240). Integration of available "omic" data identified a 9-gene set (TNPO1, NUP214, HDAC1, HNRNPA1, GATAD2A, FOSB, DDX17, PHF20, CREBBP) that differentiated ARDS survivors/non-survivors, results that were validated utilizing a longitudinal transcription dataset. Pathway analysis identified TP53-, HDAC1-, TGF-β-, and IL-6-signaling pathways to be associated with ARDS mortality. Predictive biomarker discovery identified transcription levels of the 9-gene set (AUC-0.83) and Day 7 angiopoietin 2 protein levels as potential candidate predictors of ARDS mortality (AUC-0.70). These results underscore the value of utilizing integrated "multi-omics" approaches in underpowered datasets from racially diverse ARDS subjects.

Indexed as

AdultAgedBiomarkersDatasets as TopicDNA MethylationFemaleGene Expression ProfilingGenome-Wide Association StudyHumansMaleMiddle AgedProteomicsRespiratory Distress SyndromeRisk AssessmentSequence Analysis, RNATreatment OutcomeBiomarkers

Identifiers

PMID34556700
PMCPMC8460799

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.