Evidence map›Paper›PMID 34556639›Full record

ArticleNature communications2021

Physical basis for the determination of lumen shape in a simple epithelium.

Claudia G Vasquez, Vipul T Vachharajani, Carlos Garzon-Coral, Alexander R Dunn

Abstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Biophysics of lumen morphogenesis.Development (Cambridge, England) · 2026
    Review
  3. Tight junction structure, assembly and (dys)function.Nature reviews. Molecular cell biology · 2026
    Review
  4. Article
  5. Article
  6. Physics of notochord tube expansion in ascidians.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Shaping epithelial lumina under pressure.Biochemical Society transactions · 2024
    Review
  12. Article
  13. Review
  14. Article
  15. Hydrostatic pressure as a driver of cell and tissue morphogenesis.Seminars in cell & developmental biology · 2022
    Review
  16. Morphogenetic Roles of Hydrostatic Pressure in Animal Development.Annual review of cell and developmental biology · 2022
    Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Claudia G Vasquez *Department of Chemical Engineering, Stanford, USA.
Vipul T Vachharajani *Biophysics Program, Stanford University, Stanford, CA, USA.ORCID 0000-0002-9590-4883
Carlos Garzon-CoralDepartment of Chemical Engineering, Stanford, USA.ORCID 0000-0002-7589-338X
Alexander R DunnStanford Cardiovascular Institute, Stanford University School of Medicine, Stanford, CA, USA. alex.dunn@stanford.edu.ORCID 0000-0001-6096-4600

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007365 · NIGMS · STANFORD UNIVERSITY · PI CHUA, KATRIN F · 1985 to 2021
$33.8M
Molecular mechanisms underlying force transduction at cellular adhesion complexesR35GM130332 · NIGMS · STANFORD UNIVERSITY · PI Alexander R Dunn · 2019 to 2026
$4.9M
Molecular mechanisms underlying force sensing at intercellular junctionsR01GM117457 · NIGMS · STANFORD UNIVERSITY · PI DUNN, ALEXANDER R, WEIS, WILLIAM I · 2016 to 2019
$1.5M
Investigating the physical mechanisms that drive multicellular lumen morphogenesisF32GM125113 · NIGMS · STANFORD UNIVERSITY · PI VASQUEZ, CLAUDIA GABRIELA · 2017 to 2018
$118k
Molecular Basis of Renal Epithelial Cell-Cell AdhesionF30DK124985 · NIDDK · STANFORD UNIVERSITY · PI VACHHARAJANI, VIPUL · 2020 to 2022
$109k
Howard Hughes Medical InstituteNIDDK NIH HHS F30 DK124985NIGMS NIH HHS F32 GM125113NIGMS NIH HHS R01 GM117457NIGMS NIH HHS R35 GM130332NIGMS NIH HHS T32 GM007365
6 · The paper itself

Abstract

The formation of a hollow lumen in a formerly solid mass of cells is a key developmental process whose dysregulation leads to diseases of the kidney and other organs. Hydrostatic pressure has been proposed to drive lumen expansion, a view that is supported by experiments in the mouse blastocyst. However, lumens formed in other tissues adopt irregular shapes with cell apical faces that are bowed inward, suggesting that pressure may not be the dominant contributor to lumen shape in all cases. Here we use live-cell imaging to study the physical mechanism of lumen formation in Madin-Darby Canine Kidney cell spheroids, a canonical cell-culture model for lumenogenesis. We find that in this system, lumen shape reflects basic geometrical considerations tied to the establishment of apico-basal polarity. A physical model incorporating both cell geometry and intraluminal pressure can account for our observations as well as cases in which pressure plays a dominant role.

Indexed as

AlgorithmsModels, TheoreticalAnimalsCell MembraneCytoskeletonDeamino Arginine VasopressinDogsEpithelial CellsEpitheliumExtracellular MatrixMadin Darby Canine Kidney CellsMicroscopy, ConfocalNocodazoleOuabainSpheroids, CellularTubulin ModulatorsDeamino Arginine VasopressinNocodazoleOuabainTubulin Modulators

Identifiers

PMID34556639
PMCPMC8460836

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.