Evidence map›Paper›PMID 34556094›Full record

ArticleBMC biology2021

Control of vein-forming, striped gene expression by auxin signaling.

Anmol Krishna, Jason Gardiner, Tyler J Donner, Enrico Scarpella

Abstract read
In one paragraph

Article in BMC biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Computational Models of Auxin-Driven Patterning in Shoots.Cold Spring Harbor perspectives in biology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Anmol Krishna *Department of Biological Sciences, University of Alberta, CW-405 Biological Sciences Building, Edmonton, AB, T6G 2E9, Canada.
Jason Gardiner *Department of Biological Sciences, University of Alberta, CW-405 Biological Sciences Building, Edmonton, AB, T6G 2E9, Canada.
Tyler J DonnerDepartment of Biological Sciences, University of Alberta, CW-405 Biological Sciences Building, Edmonton, AB, T6G 2E9, Canada.
Enrico ScarpellaDepartment of Biological Sciences, University of Alberta, CW-405 Biological Sciences Building, Edmonton, AB, T6G 2E9, Canada. enrico.scarpella@ualberta.ca.ORCID 0000-0003-2962-0329

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundActivation of gene expression in striped domains is a key building block of biological patterning, from the recursive formation of veins in plant leaves to that of ribs and vertebrae in our bodies. In animals, gene expression is activated in striped domains by the differential affinity of broadly expressed transcription factors for their target genes and the combinatorial interaction between such target genes. In plants, how gene expression is activated in striped domains is instead unknown. We address this question for the broadly expressed MONOPTEROS (MP) transcription factor and its target gene ARABIDOPSIS THALIANA HOMEOBOX FACTOR8 (ATHB8).

resultsWe find that ATHB8 promotes vein formation and that such vein-forming function depends on both levels of ATHB8 expression and width of ATHB8 expression domains. We further find that ATHB8 expression is activated in striped domains by a combination of (1) activation of ATHB8 expression through binding of peak levels of MP to a low-affinity MP-binding site in the ATHB8 promoter and (2) repression of ATHB8 expression by MP target genes of the AUXIN/INDOLE-3-ACETIC-ACID-INDUCIBLE family.

conclusionsOur findings suggest that a common regulatory logic controls activation of gene expression in striped domains in both plants and animals despite the independent evolution of their multicellularity.

Indexed as

ArabidopsisArabidopsis ProteinsGene ExpressionGene Expression Regulation, PlantIndoleacetic AcidsTranscription FactorsArabidopsis ProteinsIndoleacetic AcidsTranscription FactorsArabidopsis thalianaARABIDOPSIS THALIANA HOMEOBOX8AuxinGene regulatory networkIncoherent feedforward loopLeaf vascular patterningMONOPTEROSStripe formationVein network formation

Identifiers

PMID34556094
PMCPMC8461865

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.