Evidence map›Paper›PMID 34555028›Full record

ArticlePloS one2021

Development of a 3-transcript host expression assay to differentiate between viral and bacterial infections in pigs.

Bernt Hjertner, Claudia Lützelschwab, Elise Schieck, Benjamin Nzau, Sonal Henson, Marie Sjölund, Caroline Fossum, Ulf Magnusson

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Bernt HjertnerDepartment of Biomedical Sciences and Veterinary Public Health, Swedish University of Agricultural Sciences, SLU, Uppsala, Sweden.ORCID 0000-0002-7827-2589
Claudia LützelschwabDepartment of Biomedical Sciences and Veterinary Public Health, Swedish University of Agricultural Sciences, SLU, Uppsala, Sweden.
Elise SchieckInternational Livestock Research Institute, Nairobi, Kenya.
Benjamin NzauInternational Livestock Research Institute, Nairobi, Kenya.
Sonal HensonInternational Livestock Research Institute, Nairobi, Kenya.
Marie SjölundDepartment of Animal Health and Antimicrobial Strategies, National Veterinary Institute, SVA, Uppsala, Sweden.
Caroline FossumDepartment of Biomedical Sciences and Veterinary Public Health, Swedish University of Agricultural Sciences, SLU, Uppsala, Sweden.
Ulf MagnussonDepartment of Clinical Sciences, Swedish University of Agricultural Sciences, SLU, Uppsala, Sweden.
Swedish University of Agricultural Sciences · SEInternational Livestock Research Institute · KESwedish Veterinary Agency · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Indiscriminate use of antibiotics to treat infections that are of viral origin contributes to unnecessary use which potentially may induce resistance in commensal bacteria. To counteract this a number of host gene transcriptional studies have been conducted to identify genes that are differently expressed during bacterial and viral infections in humans, and thus could be used as a tool to base decisions on the use of antibiotics. In this paper, we aimed to evaluate the potential of a selection of genes that have been considered biomarkers in humans, to differentially diagnose bacterial from viral infections in the pig. First porcine PBMC were induced with six toll-like receptor (TLR) agonists (FliC, LPS, ODN 2216, Pam3CSK4, poly I:C, R848) to mimic host gene expression induced by bacterial or viral pathogens, or exposed to heat-killed Actinobacillus pleuropneumoniae or a split influenza virus. Genes that were differentially expressed between bacterial and viral inducers were further evaluated on clinical material comprising eleven healthy pigs, and six pigs infected with A. pleuropneumoniae. This comprised three virally upregulated genes (IFI44L, MxA, RSAD2) and four bacterially upregulated genes (IL-1β, IL-8, FAM89A, S100PBP). All six infected pigs could be differentially diagnosed to healthy pigs using a host gene transcription assay based on the geometric average of the bacterially induced genes IL-8 and S100PBP over that of the virally induced gene MxA.

Indexed as

AnimalsBacteriaBacterial InfectionsBacterial ProteinsBiological AssayLeukocytes, MononuclearSwineSwine DiseasesViral ProteinsVirus DiseasesVirusesBacterial ProteinsViral Proteins

Identifiers

PMID34555028
PMCPMC8459988
OpenAlexW3199785563

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.