Evidence map›Paper›PMID 34553251›Full record

ArticleApplied microbiology and biotechnology2021

Characterization and structural analysis of a thermophilic GH11 xylanase from compost metatranscriptome.

Yunlei Yi, Shenyuan Xu, Andrey Kovalevsky, Xia Zhang, Dongyang Liu, Qun Wan

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Applied microbiology and biotechnology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Lignocellulolytic extremozymes and their biotechnological applications.Extremophiles : life under extreme conditions · 2023
    Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Yunlei YiCollege of Science, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Shenyuan XuKey Laboratory of Bioorganic Synthesis of Zhejiang Province, College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou, People's Republic of China.
Andrey KovalevskyNeutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Xia ZhangDepartment of Molecular Biology, Qingdao Vland Biotech Group Inc., Qingdao, Shandong, 266000, People's Republic of China.
Dongyang LiuCollege of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Qun WanCollege of Science, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China. qunwan@njau.edu.cn.ORCID http://orcid.org/0000-0002-8309-0341
Nanjing Agricultural University · CNOak Ridge National Laboratory · USZhejiang University of Technology · CN

Funding

Fundamental Research Funds for the Central Universities No.KYXK202009National Natural Science Foundation of China 31670790National Natural Science Foundation of China 32071264
6 · The paper itself

Abstract

Xylanase is efficient for xylan degradation and widely applied in industries. We found a GH11 family xylanase (Xyn11A) with high thermostability and catalytic activity from compost metatranscriptome. This xylanase has the optimal reaction temperature at 80 °C with the activity of 2907.3 U/mg. The X-ray crystallographic structure shows a typical "right hand" architecture, which is the characteristics of the GH11 family enzymes. Comparing it with the mesophilic XYN II, a well-studied GH11 xylanase from Trichoderma reesei, Xyn11A is more compact with more H-bonds. Our mutagenic results show that the electrostatic interactions in the thumb and palm region of Xyn11A could result in its high thermostability and activity. Introducing a disulfide bond at the N-terminus further increased its optimal reaction temperature to 90 °C with augmented activity. KEY POINTS: • A hyperthermophilic xylanase with high activity was discovered using the metatranscriptomic method. • The mechanisms of thermophilicity and high activity were revealed using X-ray crystallography, mutagenesis, and molecular dynamics simulations. • The thermostability and activity were further improved by introducing a disulfide bond.

Indexed as

CompostingEndo-1,4-beta XylanasesCrystallography, X-RayEnzyme StabilityHypocrealesEndo-1,4-beta XylanasesCrystal structureGH11 xylanaseMD simulationsThermostability

Identifiers

PMID34553251
OpenAlexW3200366393

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.