Evidence map›Paper›PMID 34552066›Full record

ArticleNature communications2021

Super-enhancer-based identification of a BATF3/IL-2R-module reveals vulnerabilities in anaplastic large cell lymphoma.

Huan-Chang Liang, Mariantonia Costanza, Nicole Prutsch, Mark W Zimmerman, Elisabeth Gurnhofer, Ivonne A Montes-Mojarro, Brian J Abraham, Nina Prokoph, Stefan Stoiber, Simone Tangermann and 33 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 42 citations in OpenAlex.

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  15. Updates on Non-B-Lymphoid Neoplasms: A Review of the 5Journal of clinical practice and research · 2024
    Review
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  18. Challenges and new technologies in adoptive cell therapy.Journal of hematology & oncology · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

43 authors at 20 institutions in 11 countries.

Huan-Chang LiangDepartment of Pathology, Unit of Experimental and Laboratory Animal Pathology, Medical University of Vienna, Vienna, Austria.ORCID 0000-0003-2612-3714
Mariantonia CostanzaEuropean Research Initiative on ALK-Related Malignancies (ERIA), Suzanne Turner, Cambridge, UK.ORCID 0000-0002-8959-1083
Nicole PrutschDepartment of Pediatric Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA.
Mark W ZimmermanDepartment of Pediatric Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA.ORCID 0000-0003-2489-3889
Elisabeth GurnhoferDepartment of Pathology, Unit of Experimental and Laboratory Animal Pathology, Medical University of Vienna, Vienna, Austria.
Ivonne A Montes-MojarroEuropean Research Initiative on ALK-Related Malignancies (ERIA), Suzanne Turner, Cambridge, UK.ORCID 0000-0003-0636-7623
Brian J AbrahamDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0001-8085-3027
Nina ProkophEuropean Research Initiative on ALK-Related Malignancies (ERIA), Suzanne Turner, Cambridge, UK.ORCID 0000-0002-6429-9895
Stefan StoiberDepartment of Pathology, Unit of Experimental and Laboratory Animal Pathology, Medical University of Vienna, Vienna, Austria.ORCID 0000-0003-3293-867X
Simone TangermannUnit of Laboratory Animal Pathology, University of Veterinary Medicine Vienna, Vienna, Austria.
Cosimo LobelloEuropean Research Initiative on ALK-Related Malignancies (ERIA), Suzanne Turner, Cambridge, UK.
Jan OppeltCentral European Institute of Technology (CEITEC), Masaryk University, Brno, Czech Republic.ORCID 0000-0002-3076-4840
Ioannis AnagnostopoulosInstitute of Pathology, University of Würzburg, Würzburg, Germany.
Thomas HielscherGerman Cancer Consortium (DKTK) German Cancer Research Center (DKFZ), Heidelberg, Germany.
Shahid PervezDepartment of Pathology and Laboratory Medicine, Aga Khan University Hospital, Karachi, Pakistan.
Wolfram KlapperDepartment of Pathology, Hematopathology Section, University Hospital Schleswig-Holstein Campus Kiel, Kiel, Germany.ORCID 0000-0001-7208-4117
Francesca ZammarchiADC Therapeutics (UK) Limited, London, UK.
Daniel-Adriano SilvaInstitute for Protein Design, University of Washington, Seattle, WA, USA.ORCID 0000-0002-3195-9009
K Christopher GarciaDepartments of Molecular and Cellular Physiology and Structural Biology, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0001-9273-0278
David BakerInstitute for Protein Design, University of Washington, Seattle, WA, USA.ORCID 0000-0001-7896-6217
Martin JanzGroup Biology of Malignant Lymphomas, Max-Delbrück-Center (MDC) for Molecular Medicine, Berlin, Germany.ORCID 0000-0002-1127-0044
Nikolai SchleussnerGroup Biology of Malignant Lymphomas, Max-Delbrück-Center (MDC) for Molecular Medicine, Berlin, Germany.
Falko FendEuropean Research Initiative on ALK-Related Malignancies (ERIA), Suzanne Turner, Cambridge, UK.ORCID 0000-0002-5496-293X
Šárka PospíšilováEuropean Research Initiative on ALK-Related Malignancies (ERIA), Suzanne Turner, Cambridge, UK.
Andrea JanikováEuropean Research Initiative on ALK-Related Malignancies (ERIA), Suzanne Turner, Cambridge, UK.
Jacqueline WallwitzDepartment of Pharmacology, Physiology and Microbiology, Division Pharmacology, Karl Landsteiner University of Health Sciences, Krems, Austria.
Dagmar StoiberDepartment of Pharmacology, Physiology and Microbiology, Division Pharmacology, Karl Landsteiner University of Health Sciences, Krems, Austria.
Ingrid Simonitsch-KluppDepartment of Pathology, Unit of Experimental and Laboratory Animal Pathology, Medical University of Vienna, Vienna, Austria.
Lorenzo CerroniDepartment of Dermatology, Medical University of Graz, Graz, Austria.
Stefano PileriDivision of Haematopathology, European Institute of Oncology IRCCS, Milan, Italy.
Laurence de LevalInstitute of Pathology, Lausanne University Hospital (CHUV) and Lausanne University, Lausanne, Switzerland.ORCID 0000-0003-3994-516X
David SibonHematology Department, Necker University Hospital, Assistance Publique-Hôpitaux de Paris, and Institut Necker-Enfants Malades, INSERM UMR1151 (Normal and pathological lymphoid differentiation), Université de Paris, Paris, France.
Virginie FataccioliDepartment of Pathology, Henri Mondor University Hospital, AP-HP, INSERM U955, University Paris East, Créteil, France.
Philippe GaulardDepartment of Pathology, Henri Mondor University Hospital, AP-HP, INSERM U955, University Paris East, Créteil, France.
Chalid AssafDepartment of Dermatology, HELIOS Hospital Krefeld, Krefeld, Department of Dermatology and Allergy, Charité-Universitätsmedizin Berlin, Berlin, Germany.
Fabian KnörrPediatric Hematology and Oncology, University Hospital Hamburg-Eppendorf, Hamburg, Germany.
Christine Damm-WelkEuropean Research Initiative on ALK-Related Malignancies (ERIA), Suzanne Turner, Cambridge, UK.
Wilhelm WoessmannEuropean Research Initiative on ALK-Related Malignancies (ERIA), Suzanne Turner, Cambridge, UK.
Suzanne D TurnerEuropean Research Initiative on ALK-Related Malignancies (ERIA), Suzanne Turner, Cambridge, UK.ORCID 0000-0002-8439-4507
A Thomas LookDepartment of Pediatric Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA.ORCID 0000-0001-7851-8617
Stephan Mathas *European Research Initiative on ALK-Related Malignancies (ERIA), Suzanne Turner, Cambridge, UK. stephan.mathas@charite.de.ORCID 0000-0001-9626-1413
Lukas Kenner *Department of Pathology, Unit of Experimental and Laboratory Animal Pathology, Medical University of Vienna, Vienna, Austria. lukas.kenner@meduniwien.ac.at.ORCID 0000-0003-2184-1338
Olaf Merkel *Department of Pathology, Unit of Experimental and Laboratory Animal Pathology, Medical University of Vienna, Vienna, Austria. olaf.merkel@meduniwien.ac.at.ORCID 0000-0001-5089-344X
Central European Institute of Technology · CZHarvard University · USMax Delbrück Center · DEMedical University of Vienna · ATUniversität Hamburg · DEGerman Cancer Research Center · DEHoward Hughes Medical Institute · USInserm · FRKarl Landsteiner University of Health Sciences · ATUniversity of Veterinary Medicine Vienna · ATAga Khan University Hospital · PKChristian Doppler Laboratory for Thermoelectricity · ATCommunity Research Initiative · USEuropean Institute of Oncology · ITHelios Klinikum Krefeld · DEHong Kong University of Science and Technology · HKHôpital Necker-Enfants Malades · FRMedical University of Graz · ATSt. Jude Children's Research Hospital · USUniversity Hospital Brno · CZ

Funding

Mechanisms and Vulnerabilities of Aberrant Transcriptional Enhancers in CancerR35CA210064 · NCI · DANA-FARBER CANCER INST · PI LOOK, A. THOMAS · 2016 to 2022
$7.3M
NCI NIH HHS R35 CA210064
6 · The paper itself

Abstract

Anaplastic large cell lymphoma (ALCL), an aggressive CD30-positive T-cell lymphoma, comprises systemic anaplastic lymphoma kinase (ALK)-positive, and ALK-negative, primary cutaneous and breast implant-associated ALCL. Prognosis of some ALCL subgroups is still unsatisfactory, and already in second line effective treatment options are lacking. To identify genes defining ALCL cell state and dependencies, we here characterize super-enhancer regions by genome-wide H3K27ac ChIP-seq. In addition to known ALCL key regulators, the AP-1-member BATF3 and IL-2 receptor (IL2R)-components are among the top hits. Specific and high-level IL2R expression in ALCL correlates with BATF3 expression. Confirming a regulatory link, IL-2R-expression decreases following BATF3 knockout, and BATF3 is recruited to IL2R regulatory regions. Functionally, IL-2, IL-15 and Neo-2/15, a hyper-stable IL-2/IL-15 mimic, accelerate ALCL growth and activate STAT1, STAT5 and ERK1/2. In line, strong IL-2Rα-expression in ALCL patients is linked to more aggressive clinical presentation. Finally, an IL-2Rα-targeting antibody-drug conjugate efficiently kills ALCL cells in vitro and in vivo. Our results highlight the importance of the BATF3/IL-2R-module for ALCL biology and identify IL-2Rα-targeting as a promising treatment strategy for ALCL.

Indexed as

AnimalsBasic-Leucine Zipper Transcription FactorsCell Line, TumorCell ProliferationCell SurvivalGene Expression Regulation, NeoplasticHumansImmunoconjugatesInterleukin-15Interleukin-2Interleukin-2 Receptor alpha SubunitKi-1 AntigenLymphoma, Large-Cell, AnaplasticMiceReceptors, Interleukin-2Regulatory Sequences, Nucleic AcidBasic-Leucine Zipper Transcription FactorsBATF3 protein, humanIL2RA protein, humanImmunoconjugatesInterleukin-15Interleukin-2Interleukin-2 Receptor alpha SubunitKi-1 AntigenReceptors, Interleukin-2Repressor Proteins

Identifiers

PMID34552066
PMCPMC8458384
OpenAlexW3195418414

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.