Evidence map›Paper›PMID 34550968›Full record

ArticlePLoS computational biology2021

Emergent spatiotemporal population dynamics with cell-length control of synthetic microbial consortia.

James J Winkle, Bhargav R Karamched, Matthew R Bennett, William Ott, Krešimir Josić

Abstract read
In one paragraph

Article in PLoS computational biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Dissecting the physics of bacterial biofilms with agent-based simulations.Current opinion in solid state & materials science · 2025
    Article
  4. Article
  5. Article
  6. Signaling in microbial communities with open boundaries.bioRxiv : the preprint server for biology · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

James J WinkleDepartment of Mathematics, University of Houston, Houston, Texas, United States of America.ORCID 0000-0001-8863-3133
Bhargav R KaramchedDepartment of Mathematics, Florida State University, Tallahassee, Florida, United States of America.ORCID 0000-0002-6926-7593
Matthew R BennettDepartment of Bioengineering, Rice University, Houston, Texas, United States of America.ORCID 0000-0002-4975-8854
William OttDepartment of Mathematics, University of Houston, Houston, Texas, United States of America.ORCID 0000-0002-7119-491X
Krešimir JosićDepartment of Mathematics, University of Houston, Houston, Texas, United States of America.ORCID 0000-0002-1975-3913

Funding

Expanding the utility of transcriptional bacterial computingR01GM117138 · NIGMS · RICE UNIVERSITY · PI BENNETT, MATTHEW R., JOSIC, KRESIMIR · 2016 to 2019
$2.0M
NIGMS NIH HHS R01 GM117138
6 · The paper itself

Abstract

The increased complexity of synthetic microbial biocircuits highlights the need for distributed cell functionality due to concomitant increases in metabolic and regulatory burdens imposed on single-strain topologies. Distributed systems, however, introduce additional challenges since consortium composition and spatiotemporal dynamics of constituent strains must be robustly controlled to achieve desired circuit behaviors. Here, we address these challenges with a modeling-based investigation of emergent spatiotemporal population dynamics using cell-length control in monolayer, two-strain bacterial consortia. We demonstrate that with dynamic control of a strain's division length, nematic cell alignment in close-packed monolayers can be destabilized. We find that this destabilization confers an emergent, competitive advantage to smaller-length strains-but by mechanisms that differ depending on the spatial patterns of the population. We used complementary modeling approaches to elucidate underlying mechanisms: an agent-based model to simulate detailed mechanical and signaling interactions between the competing strains, and a reductive, stochastic lattice model to represent cell-cell interactions with a single rotational parameter. Our modeling suggests that spatial strain-fraction oscillations can be generated when cell-length control is coupled to quorum-sensing signaling in negative feedback topologies. Our research employs novel methods of population control and points the way to programming strain fraction dynamics in consortial synthetic biology.

Indexed as

Models, BiologicalSynthetic BiologyComputational BiologyComputer SimulationMicrobial ConsortiaMicrobial InteractionsQuorum SensingSignal TransductionSpatio-Temporal AnalysisStochastic ProcessesSystems Analysis

Identifiers

PMID34550968
PMCPMC8489724

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.