Evidence map›Paper›PMID 34550730›Full record

ArticleScience advances2021

High-throughput single-cell quantification of hundreds of proteins using conventional flow cytometry and machine learning.

Etienne Becht, Daniel Tolstrup, Charles-Antoine Dutertre, Peter A Morawski, Daniel J Campbell, Florent Ginhoux, Evan W Newell, Raphael Gottardo, Mark B Headley

Abstract read
In one paragraph

Article in Science advances, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

  1. Trial
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  12. Pregnancy-acquired memory CD4Nature communications · 2025
    Article
  13. Review
  14. Article
  15. Deciphering the aging process through single-cell cytometric technologies.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2024
    Review
  16. Cholinergic macrophages promote the resolution of peritoneal inflammation.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  17. Mapping human hematopoiesis.Nature immunology · 2024
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Etienne BechtVaccine and Infectious Diseases Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.ORCID 0000-0003-1859-9202
Daniel TolstrupClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.ORCID 0000-0002-5922-7045
Charles-Antoine DutertreSingapore Immunology Network, Agency for Science, Technology and Research, Singapore, Singapore.
Peter A MorawskiCenter for Fundamental Immunology, Benaroya Research Institute, Seattle, WA, USA.ORCID 0000-0001-9159-4032
Daniel J CampbellCenter for Fundamental Immunology, Benaroya Research Institute, Seattle, WA, USA.ORCID 0000-0002-9652-7178
Florent GinhouxSingapore Immunology Network, Agency for Science, Technology and Research, Singapore, Singapore.ORCID 0000-0002-2857-7755
Evan W NewellVaccine and Infectious Diseases Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.ORCID 0000-0002-2889-243X
Raphael GottardoVaccine and Infectious Diseases Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.ORCID 0000-0002-3867-0232
Mark B HeadleyClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.ORCID 0000-0002-0924-9326

Funding

Systems Biology CoreU19AI128914 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI Margaret Juliana McElrath, KENNETH D STUART · 2017 to 2026
$29.5M
Regulation of cutaneous immunity and tissue-repair by a specialized population of CD4+ T cellsR01AI127726 · NIAID · BENAROYA RESEARCH INST AT VIRGINIA MASON · PI CAMPBELL, DANIEL J, GRATZ, IRIS KARINA · 2017 to 2021
$2.8M
NIAID NIH HHS R01 AI127726NIAID NIH HHS U19 AI128914
6 · The paper itself

Abstract

Modern immunologic research increasingly requires high-dimensional analyses to understand the complex milieu of cell types that comprise the tissue microenvironments of disease. To achieve this, we developed Infinity Flow combining hundreds of overlapping flow cytometry panels using machine learning to enable the simultaneous analysis of the coexpression patterns of hundreds of surface-expressed proteins across millions of individual cells. In this study, we demonstrate that this approach allows the comprehensive analysis of the cellular constituency of the steady-state murine lung and the identification of previously unknown cellular heterogeneity in the lungs of melanoma metastasis–bearing mice. We show that by using supervised machine learning, Infinity Flow enhances the accuracy and depth of clustering or dimensionality reduction algorithms. Infinity Flow is a highly scalable, low-cost, and accessible solution to single-cell proteomics in complex tissues.

Identifiers

PMID34550730
PMCPMC8457665

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.