Evidence map›Paper›PMID 34550348›Full record

ArticleG3 (Bethesda, Md.)2021

Identification of essential genes in Caenorhabditis elegans through whole-genome sequencing of legacy mutant collections.

Erica Li-Leger, Richard Feichtinger, Stephane Flibotte, Heinke Holzkamp, Ralf Schnabel, Donald G Moerman

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Biomolecules · 2022
    Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Erica Li-LegerDepartment of Zoology, University of British Columbia, Vancouver, BC V6T 1Z3, Canada.
Richard FeichtingerDepartment of Developmental Genetics, Institute of Genetics, Technische Universität, Braunschweig 38106, Germany.
Stephane FlibotteUBC/LSI Bioinformatics Facility, University of British Columbia, Vancouver, BC V6T 1Z3, Canada.
Heinke HolzkampDepartment of Developmental Genetics, Institute of Genetics, Technische Universität, Braunschweig 38106, Germany.
Ralf SchnabelDepartment of Developmental Genetics, Institute of Genetics, Technische Universität, Braunschweig 38106, Germany.
Donald G MoermanDepartment of Zoology, University of British Columbia, Vancouver, BC V6T 1Z3, Canada.
Technische Universität Braunschweig · DEUniversity of British Columbia · CA

Funding

Enhancing the C. elegans animal resource through genome editingR24OD023041 · OD · UNIVERSITY OF MINNESOTA · PI ROUGVIE, ANN E., STERNBERG, PAUL WARREN · 2017 to 2024
$5.1M
CIHR PJT-148549NIH HHS R24 OD023041
6 · The paper itself

Abstract

It has been estimated that 15%-30% of the ∼20,000 genes in C. elegans are essential, yet many of these genes remain to be identified or characterized. With the goal of identifying unknown essential genes, we performed whole-genome sequencing on complementation pairs from legacy collections of maternal-effect lethal and sterile mutants. This approach uncovered maternal genes required for embryonic development and genes with apparent sperm-specific functions. In total, 58 putative essential genes were identified on chromosomes III-V, of which 52 genes are represented by novel alleles in this collection. Of these 52 genes, 19 (40 alleles) were selected for further functional characterization. The terminal phenotypes of embryos were examined, revealing defects in cell division, morphogenesis, and osmotic integrity of the eggshell. Mating assays with wild-type males revealed previously unknown male-expressed genes required for fertilization and embryonic development. The result of this study is a catalog of mutant alleles in essential genes that will serve as a resource to guide further study toward a more complete understanding of this important model organism. As many genes and developmental pathways in C. elegans are conserved and essential genes are often linked to human disease, uncovering the function of these genes may also provide insight to further our understanding of human biology.

Indexed as

Caenorhabditis elegansCaenorhabditis elegans ProteinsAnimalsGenes, EssentialHumansMaleMutationPhenotypeWhole Genome SequencingCaenorhabditis elegans ProteinsC. elegansembryogenesisessential genesfertilizationlegacy mutantsmaternal-effectwhole-genome sequencing

Identifiers

PMID34550348
PMCPMC8664450
OpenAlexW3200590371

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.