Evidence map›Paper›PMID 34548634›Full record

ArticleNature microbiology2021

Genetic and structural basis for SARS-CoV-2 variant neutralization by a two-antibody cocktail.

Jinhui Dong, Seth J Zost, Allison J Greaney, Tyler N Starr, Adam S Dingens, Elaine C Chen, Rita E Chen, James Brett Case, Rachel E Sutton, Pavlo Gilchuk and 22 more

Abstract read
In one paragraph

Article in Nature microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 207 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
207citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

207 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  4. AZD7442 (Tixagevimab/Cilgavimab) for Post-Exposure Prophylaxis of Symptomatic Coronavirus Disease 2019.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2023
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147 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

32 authors.

Jinhui Dong *Vanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN, USA.
Seth J Zost *Vanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN, USA.ORCID http://orcid.org/0000-0001-6712-5076
Allison J GreaneyBasic Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Tyler N StarrBasic Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.ORCID http://orcid.org/0000-0001-6713-6904
Adam S DingensBasic Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.ORCID http://orcid.org/0000-0001-9603-9409
Elaine C ChenDepartment of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN, USA.ORCID http://orcid.org/0000-0001-7883-8039
Rita E ChenDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, USA.
James Brett CaseDepartment of Medicine, Washington University School of Medicine, St. Louis, MO, USA.ORCID http://orcid.org/0000-0001-7331-5511
Rachel E SuttonVanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN, USA.
Pavlo GilchukVanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN, USA.
Jessica RodriguezVanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN, USA.
Erica ArmstrongVanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN, USA.
Christopher GainzaVanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN, USA.
Rachel S NargiVanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN, USA.
Elad BinshteinVanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN, USA.ORCID http://orcid.org/0000-0003-2745-104X
Xuping XieDepartment of Biochemistry & Molecular Biology, The University of Texas Medical Branch at Galveston, Galveston, TX, USA.ORCID http://orcid.org/0000-0003-0918-016X
Xianwen ZhangDepartment of Biochemistry & Molecular Biology, The University of Texas Medical Branch at Galveston, Galveston, TX, USA.
Pei-Yong ShiDepartment of Biochemistry & Molecular Biology, The University of Texas Medical Branch at Galveston, Galveston, TX, USA.ORCID http://orcid.org/0000-0001-5553-1616
James LogueDepartment of Microbiology and Immunology, The University of Maryland, College Park, MD, USA.ORCID http://orcid.org/0000-0002-7410-9741
Stuart WestonDepartment of Microbiology and Immunology, The University of Maryland, College Park, MD, USA.
Marisa E McGrathDepartment of Microbiology and Immunology, The University of Maryland, College Park, MD, USA.ORCID http://orcid.org/0000-0002-7451-4958
Matthew B FriemanDepartment of Microbiology and Immunology, The University of Maryland, College Park, MD, USA.ORCID http://orcid.org/0000-0003-0107-0775
Tyler BradyMicrobial Sciences, AstraZeneca, Gaithersburg, MD, USA.
Kevin M TuffyMicrobial Sciences, AstraZeneca, Gaithersburg, MD, USA.
Helen BrightMicrobial Sciences, AstraZeneca, Gaithersburg, MD, USA.
Yueh-Ming LooMicrobial Sciences, AstraZeneca, Gaithersburg, MD, USA.
Patrick M McTamneyMicrobial Sciences, AstraZeneca, Gaithersburg, MD, USA.
Mark T EsserMicrobial Sciences, AstraZeneca, Gaithersburg, MD, USA.
Robert H CarnahanVanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN, USA.ORCID http://orcid.org/0000-0001-5230-1532
Michael S DiamondDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, USA.ORCID http://orcid.org/0000-0002-8791-3165
Jesse D BloomBasic Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.ORCID http://orcid.org/0000-0003-1267-3408
James E CroweVanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN, USA. james.crowe@vumc.org.ORCID http://orcid.org/0000-0002-0049-1079

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Marian Esvelt · 1985 to 2026
$296.4M
UTMB Clinical and Translational Science AwardUL1TR001439 · NCATS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI URBAN, RANDALL J · 2015 to 2024
$40.0M
COVID Supplement B Cell Epitope Discovery and Mechanisms of Antibody Protection.75N93019C00062 · NIAID · WASHINGTON UNIVERSITY · PI FREMONT, DAVED · 2019 to 2023
$11.7M
B-CELL EPITOPE DISCOVERY AND MECHANISMS OF ANTIBODY PROTECTION: Modification for SARS-CoV2 Research75N93019C00074 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI CROWE, JAMES E · 2019 to 2024
$10.2M
Structure based design of trimer interface epitope focused universal influenza vaccinesU01AI150739 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI CROWE, JAMES E · 2020 to 2024
$6.1M
Human antibody-based countermeasures against the Wuhan Coronavirus SARS-CoV-2R01AI157155 · NIAID · WASHINGTON UNIVERSITY · PI BARIC, RALPH S, CROWE, JAMES E · 2020 to 2024
$6.0M
Childhood Infections Research ProgramT32AI095202 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI JAMES E CASSAT · 2011 to 2026
$4.2M
Viral Pathogenesis Training ProgramT32AI083203 · NIAID · UNIVERSITY OF WASHINGTON · PI BLOOM, JESSE D, LAGUNOFF, MICHAEL · 2009 to 2023
$2.7M
Prospectively characterizing the functional and antigenic effects of mutations to viral entry proteinsR01AI141707 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BLOOM, JESSE D · 2018 to 2022
$2.1M
High-Performance Compute Cluster for Comprehensive Cancer and Infectious Diseases ResearchS10OD028685 · OD · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BRADLEY, PHILIP · 2020 to 2020
$2.0M
NCATS NIH HHS UL1 TR001439NCI NIH HHS P30 CA015704NIAID NIH HHS 75N93019C00062NIAID NIH HHS 75N93019C00074NIAID NIH HHS R01 AI141707NIAID NIH HHS R01 AI157155NIAID NIH HHS T32 AI083203NIAID NIH HHS T32 AI095202NIAID NIH HHS U01 AI150739NIH HHS S10 OD028685
6 · The paper itself

Abstract

Understanding the molecular basis for immune recognition of SARS-CoV-2 spike glycoprotein antigenic sites will inform the development of improved therapeutics. We determined the structures of two human monoclonal antibodies-AZD8895 and AZD1061-which form the basis of the investigational antibody cocktail AZD7442, in complex with the receptor-binding domain (RBD) of SARS-CoV-2 to define the genetic and structural basis of neutralization. AZD8895 forms an 'aromatic cage' at the heavy/light chain interface using germ line-encoded residues in complementarity-determining regions (CDRs) 2 and 3 of the heavy chain and CDRs 1 and 3 of the light chain. These structural features explain why highly similar antibodies (public clonotypes) have been isolated from multiple individuals. AZD1061 has an unusually long LCDR1; the HCDR3 makes interactions with the opposite face of the RBD from that of AZD8895. Using deep mutational scanning and neutralization escape selection experiments, we comprehensively mapped the crucial binding residues of both antibodies and identified positions of concern with regards to virus escape from antibody-mediated neutralization. Both AZD8895 and AZD1061 have strong neutralizing activity against SARS-CoV-2 and variants of concern with antigenic substitutions in the RBD. We conclude that germ line-encoded antibody features enable recognition of the SARS-CoV-2 spike RBD and demonstrate the utility of the cocktail AZD7442 in neutralizing emerging variant viruses.

Indexed as

Antibodies, MonoclonalAntibodies, NeutralizingAntibodies, ViralAntigenic VariationBinding SitesComplementarity Determining RegionsCOVID-19HumansMutationProtein DomainsSARS-CoV-2Spike Glycoprotein, CoronavirusAntibodies, MonoclonalAntibodies, NeutralizingAntibodies, ViralComplementarity Determining RegionsSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2

Identifiers

PMID34548634
PMCPMC8543371

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.