Evidence map›Paper›PMID 34548609›Full record

ArticleCommunications biology2021

Age-related demethylation of the TDP-43 autoregulatory region in the human motor cortex.

Yuka Koike, Akihiro Sugai, Norikazu Hara, Junko Ito, Akio Yokoseki, Tomohiko Ishihara, Takuma Yamagishi, Shintaro Tsuboguchi, Mari Tada, Takeshi Ikeuchi and 2 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.9field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 26 citations in OpenAlex.

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  7. TDP-43 controls RNA structure through high affinity lattice interactions.bioRxiv : the preprint server for biology · 2025
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  19. TDP-43 Epigenetic Facets and Their Neurodegenerative Implications.International journal of molecular sciences · 2023
    Review
  20. Old age amyotrophic lateral sclerosis and limbic TDP-43 pathology.Brain pathology (Zurich, Switzerland) · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Yuka KoikeDepartment of Neurology, Brain Research Institute, Niigata University, Niigata city, Japan.ORCID 0000-0002-5067-8579
Akihiro SugaiDepartment of Molecular Neuroscience, Center for Bioresource-based Research, Brain Research Institute, Niigata University, Niigata city, Japan. akihiro.sugai@bri.niigata-u.ac.jp.ORCID 0000-0002-7460-3029
Norikazu HaraDepartment of Molecular Genetics, Center for Bioresource-based Research, Brain Research Institute, Niigata University, Niigata city, Japan.
Junko ItoDepartment of Pathology, Brain Research Institute, Niigata University, Niigata city, Japan.
Akio YokosekiDepartment of Inter-Organ Communication Research, Niigata University Graduate School of Medical and Dental Sciences, Niigata city, Japan.
Tomohiko IshiharaDepartment of Neurology, Brain Research Institute, Niigata University, Niigata city, Japan.
Takuma YamagishiDepartment of Neurology, Brain Research Institute, Niigata University, Niigata city, Japan.
Shintaro TsuboguchiDepartment of Neurology, Brain Research Institute, Niigata University, Niigata city, Japan.
Mari TadaDepartment of Pathology Neuroscience, Center for Bioresource-based Research, Brain Research Institute, Niigata University, Niigata city, Japan.
Takeshi IkeuchiDepartment of Molecular Genetics, Center for Bioresource-based Research, Brain Research Institute, Niigata University, Niigata city, Japan.ORCID 0000-0001-8828-8085
Akiyoshi KakitaDepartment of Pathology, Brain Research Institute, Niigata University, Niigata city, Japan.
Osamu OnoderaDepartment of Neurology, Brain Research Institute, Niigata University, Niigata city, Japan. onodera@bri.niigata-u.ac.jp.ORCID 0000-0003-3354-5472
Niigata University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In amyotrophic lateral sclerosis (ALS), TAR DNA-binding protein 43 (TDP-43), which is encoded by TARDBP, forms aggregates in the motor cortex. This aggregate formation may be triggered by an increase in the TDP-43 level with aging. However, the amount of TDP-43 is autoregulated by alternative splicing of the TARDBP 3'UTR, and how this autoregulation is affected by aging remains to be elucidated. We found that DNA demethylation in the autoregulatory region in the TARDBP 3'UTR reduced alternative splicing and increased TARDBP mRNA expression. Furthermore, in the human motor cortex, we found that this region was demethylated with aging, resulting in increased expression of TARDBP mRNA. The acceleration of DNA demethylation in the motor cortex was associated with the age of ALS onset. In summary, the dysregulation of TDP-43 autoregulation by age-related DNA demethylation in the motor cortex may explain the contribution of aging and motor system selectivity in ALS.

Indexed as

Alternative SplicingDemethylationHomeostasisAge FactorsDNA-Binding ProteinsHumansDNA-Binding ProteinsTARDBP protein, human

Identifiers

PMID34548609
PMCPMC8455575
OpenAlexW3199973597

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.