Evidence map›Paper›PMID 34548397›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

The LarB carboxylase/hydrolase forms a transient cysteinyl-pyridine intermediate during nickel-pincer nucleotide cofactor biosynthesis.

Joel A Rankin, Shramana Chatterjee, Zia Tariq, Satyanarayana Lagishetty, Benoît Desguin, Jian Hu, Robert P Hausinger

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
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  4. A structural view of nickel-pincer nucleotide cofactor-related biochemistry.Critical reviews in biochemistry and molecular biology · 2024
    Review
  5. Article
  6. Article
  7. Review
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  10. Article
  11. Sulfur incorporation into biomolecules: recent advances.Critical reviews in biochemistry and molecular biology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Joel A RankinDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824.ORCID 0000-0002-9775-4508
Shramana ChatterjeeDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824.ORCID 0000-0001-8765-1102
Zia TariqInstitute of Biomolecular Sciences and Technology, Université Catholique de Louvain, B-1348 Louvain-La-Neuve, Belgium.ORCID 0000-0001-5795-4356
Satyanarayana LagishettyDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824.ORCID 0000-0002-5329-1257
Benoît DesguinInstitute of Biomolecular Sciences and Technology, Université Catholique de Louvain, B-1348 Louvain-La-Neuve, Belgium.ORCID 0000-0002-5004-6918
Jian HuDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824; hausinge@msu.edu hujian1@msu.edu.ORCID 0000-0001-6657-9826
Robert P HausingerDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824; hausinge@msu.edu hujian1@msu.edu.ORCID 0000-0002-3643-2054
Michigan State University · USUCLouvain · BE

Funding

Nickel-pincer nucleotide enzymesR01GM128959 · NIGMS · MICHIGAN STATE UNIVERSITY · PI ROBERT P HAUSINGER · 2019 to 2026
$2.7M
NIGMS NIH HHS R01 GM128959
6 · The paper itself

Abstract

Enzymes possessing the nickel-pincer nucleotide (NPN) cofactor catalyze C2 racemization or epimerization reactions of α-hydroxyacid substrates. LarB initiates synthesis of the NPN cofactor from nicotinic acid adenine dinucleotide (NaAD) by performing dual reactions: pyridinium ring C5 carboxylation and phosphoanhydride hydrolysis. Here, we show that LarB uses carbon dioxide, not bicarbonate, as the substrate for carboxylation and activates water for hydrolytic attack on the AMP-associated phosphate of C5-carboxylated-NaAD. Structural investigations show that LarB has an N-terminal domain of unique fold and a C-terminal domain homologous to aminoimidazole ribonucleotide carboxylase/mutase (PurE). Like PurE, LarB is octameric with four active sites located at subunit interfaces. The complex of LarB with NAD

Indexed as

Carboxy-LyasesCatalysisCrystallography, X-RayCysteineHydrolasesHydrolysisLactiplantibacillus plantarumModels, MolecularNickelNucleotidesProtein ConformationPyridinesRacemases and EpimerasesSubstrate SpecificityCarboxy-LyasesCysteineHydrolasesNickelNucleotidesPyridinesRacemases and Epimerasescarboxylationcovalent adducthydrolysisnickel-pincer cofactor

Identifiers

PMID34548397
PMCPMC8488589
OpenAlexW3198934728

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.