Evidence map›Paper›PMID 34547329›Full record

ArticleJournal of molecular biology2021

Conformational Changes of RORγ During Response Element Recognition and Coregulator Engagement.

Timothy S Strutzenberg, Yingmin Zhu, Scott J Novick, Ruben D Garcia-Ordonez, Christelle Doebelin, Yuanjun He, Mi Ra Chang, Theodore M Kamenecka, Dean P Edwards, Patrick R Griffin

Abstract read
In one paragraph

Article in Journal of molecular biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Timothy S StrutzenbergDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, FL, USA.
Yingmin ZhuDepartment of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, USA.
Scott J NovickDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, FL, USA.
Ruben D Garcia-OrdonezDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, FL, USA.
Christelle DoebelinDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, FL, USA.
Yuanjun HeDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, FL, USA.
Mi Ra ChangDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, FL, USA.
Theodore M KameneckaDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, FL, USA.
Dean P EdwardsDepartment of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, USA.
Patrick R GriffinDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, FL, USA. Electronic address: pgriffin@scripps.edu.

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Suzanne AW Fuqua · 2007 to 2026
$73.9M
User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI Gregory L Hura · 2017 to 2026
$28.6M
PPARG regulates osteocyte bioenergetics and function during agingR01AG071332 · NIA · UNIVERSITY OF TOLEDO HEALTH SCI CAMPUS · PI GRIFFIN, PATRICK ROBERT, LECKA-CZERNIK, BEATA ANNA · 2021 to 2025
$3.4M
Optimization of RORgamma-specific agonists as immune activators for a new immunotherapy approach for cancerR01CA206493 · NCI · SCRIPPS FLORIDA · PI GRIFFIN, PATRICK ROBERT, KAMENECKA, THEODORE M · 2016 to 2018
$1.3M
A Pixel Array Detector System for Small Angle X-ray ScatteringS10OD018483 · OD · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI CLASSEN, SCOTT · 2014 to 2014
$998k
Determining the structural basis for ligand-mediated RORγ activationF31GM126842 · NIGMS · SCRIPPS FLORIDA · PI STRUTZENBERG, TIMOTHY SILAS · 2017 to 2019
$63k
NCI NIH HHS P30 CA125123NIA NIH HHS R01 AG071332NIGMS NIH HHS F31 GM126842NIGMS NIH HHS P30 GM124169NIH HHS S10 OD018483
6 · The paper itself

Abstract

The retinoic acid receptor-related orphan receptor γ (RORγ) is a ligand-dependent transcription factor of the nuclear receptor super family that underpins metabolic activity, immune function, and cancer progression. Despite being a valuable drug target in health and disease, our understanding of the ligand-dependent activities of RORγ is far from complete. Like most nuclear receptors, RORγ must recruit coregulatory protein to enact the RORγ target gene program. To date, a majority of structural studies have been focused exclusively on the RORγ ligand-binding domain and the ligand-dependent recruitment of small peptide segments of coregulators. Herein, we examine the ligand-dependent assembly of full length RORγ:coregulator complexes on cognate DNA response elements using structural proteomics and small angle x-ray scattering. The results from our studies suggest that RORγ becomes elongated upon DNA recognition, preventing long range interdomain crosstalk. We also determined that the DNA binding domain adopts a sequence-specific conformation, and that coregulatory protein may be able to 'sense' the ligand- and DNA-bound status of RORγ. We propose a model where ligand-dependent coregulator recruitment may be influenced by the sequence of the DNA to which RORγ is bound. Overall, the efforts described herein will illuminate important aspects of full length RORγ and monomeric orphan nuclear receptor target gene regulation through DNA-dependent conformational changes.

Indexed as

Response ElementsAnimalsBinding SitesDNAFemaleGene Expression RegulationHumansMass SpectrometryMiceMice, Inbred BALB CNuclear Receptor Coactivator 3Nuclear Receptor Subfamily 1, Group F, Member 3Protein ConformationScattering, Small AngleX-Ray DiffractionDNANCOA3 protein, humanNuclear Receptor Coactivator 3Nuclear Receptor Subfamily 1, Group F, Member 3RORC protein, humanHDXintegrative structural modelingRORγRORγttranscriptional coregulatorsXL-MS

Identifiers

PMID34547329
PMCPMC8556364

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.