Evidence map›Paper›PMID 34547290›Full record

ArticleThe Journal of biological chemistry2021

A new carbohydrate-active oligosaccharide dehydratase is involved in the degradation of ulvan.

Marcus Bäumgen, Theresa Dutschei, Daniel Bartosik, Christoph Suster, Lukas Reisky, Nadine Gerlach, Christian Stanetty, Marko D Mihovilovic, Thomas Schweder, Jan-Hendrik Hehemann and 1 more

Open access · goldAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Marine Polysaccharides: Occurrence, Enzymatic Degradation and Utilization.Chembiochem : a European journal of chemical biology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Marcus BäumgenDepartment of Biotechnology & Enzyme Catalysis, Institute of Biochemistry, University Greifswald, Greifswald, Germany.
Theresa DutscheiDepartment of Biotechnology & Enzyme Catalysis, Institute of Biochemistry, University Greifswald, Greifswald, Germany.
Daniel BartosikDepartment of Pharmaceutical Biotechnology, Institute of Pharmacy, University Greifswald, Greifswald, Germany.
Christoph SusterInstitute of Applied Synthetic Chemistry, TU Wien, Vienna, Austria.
Lukas ReiskyDepartment of Biotechnology & Enzyme Catalysis, Institute of Biochemistry, University Greifswald, Greifswald, Germany.
Nadine GerlachMax Planck-Institute for Marine Microbiology, Bremen, Germany; Center for Marine Environmental Sciences (MARUM), University of Bremen, Bremen, Germany.
Christian StanettyInstitute of Applied Synthetic Chemistry, TU Wien, Vienna, Austria.
Marko D MihovilovicInstitute of Applied Synthetic Chemistry, TU Wien, Vienna, Austria.
Thomas SchwederDepartment of Pharmaceutical Biotechnology, Institute of Pharmacy, University Greifswald, Greifswald, Germany.
Jan-Hendrik HehemannMax Planck-Institute for Marine Microbiology, Bremen, Germany; Center for Marine Environmental Sciences (MARUM), University of Bremen, Bremen, Germany.
Uwe T BornscheuerDepartment of Biotechnology & Enzyme Catalysis, Institute of Biochemistry, University Greifswald, Greifswald, Germany. Electronic address: uwe.bornscheuer@uni-greifswald.de.
TU Wien · ATUniversität Greifswald · DEUniversity of Bremen · DEUniversitätsmedizin Greifswald · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Marine algae catalyze half of all global photosynthetic production of carbohydrates. Owing to their fast growth rates, Ulva spp. rapidly produce substantial amounts of carbohydrate-rich biomass and represent an emerging renewable energy and carbon resource. Their major cell wall polysaccharide is the anionic carbohydrate ulvan. Here, we describe a new enzymatic degradation pathway of the marine bacterium Formosa agariphila for ulvan oligosaccharides involving unsaturated uronic acid at the nonreducing end linked to rhamnose-3-sulfate and glucuronic or iduronic acid (Δ-Rha3S-GlcA/IdoA-Rha3S). Notably, we discovered a new dehydratase (P29_PDnc) acting on the nonreducing end of ulvan oligosaccharides, i.e., GlcA/IdoA-Rha3S, forming the aforementioned unsaturated uronic acid residue. This residue represents the substrate for GH105 glycoside hydrolases, which complements the enzymatic degradation pathway including one ulvan lyase, one multimodular sulfatase, three glycoside hydrolases, and the dehydratase P29_PDnc, the latter being described for the first time. Our research thus shows that the oligosaccharide dehydratase is involved in the degradation of carboxylated polysaccharides into monosaccharides.

Indexed as

Aquatic OrganismsBacterial ProteinsCarbohydrate DehydrogenasesFlavobacteriaceaePolysaccharidesUronic AcidsBacterial ProteinsCarbohydrate Dehydrogenasesoligosaccharide dehydrogenasePolysaccharidesulvanUronic Acidscarbohydrate-active enzymesdehydrataseenzyme mechanismglycoside hydrolasemarine polysaccharidenovel enzymepathway elucidationsulfataseulvan

Identifiers

PMID34547290
PMCPMC8511951
OpenAlexW3199549809

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.