Evidence map›Paper›PMID 34546726›Full record

ArticleACS applied materials & interfaces2021

Multiplexed DNA-Directed Patterning of Antibodies for Applications in Cell Subpopulation Analysis.

Molly Kozminsky, Olivia J Scheideler, Brian Li, Nathaniel K Liu, Lydia L Sohn

Abstract read
In one paragraph

Article in ACS applied materials & interfaces, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Molly KozminskyCalifornia Institute of Quantitative Biosciences, University of California, Berkeley, 174 Stanley Hall, Berkeley, California 94720, United States.
Olivia J ScheidelerThe UC Berkeley-UC San Francisco Graduate Program in Bioengineering, University of California, Berkeley, 306 Stanley Hall, Berkeley, California 94720, United States.
Brian LiThe UC Berkeley-UC San Francisco Graduate Program in Bioengineering, University of California, Berkeley, 306 Stanley Hall, Berkeley, California 94720, United States.
Nathaniel K LiuDepartment of Mechanical Engineering, University of California, Berkeley, 5118 Etcheverry Hall, Berkeley, California 94720, United States.
Lydia L SohnCalifornia Institute of Quantitative Biosciences, University of California, Berkeley, 174 Stanley Hall, Berkeley, California 94720, United States.ORCID https://orcid.org/0000-0003-2195-2521

Funding

Mechanical Phenotyping of Random Periaerolar Fine Needle Aspiration-Collected Cells for Early Breast Cancer DetectionR01EB024989 · NIBIB · UNIVERSITY OF CALIFORNIA BERKELEY · PI Mark A LaBarge, Lydia L Sohn · 2017 to 2026
$4.8M
A Label-Free, Point-of-Care Platform to Diagnose Acute Promyelocytic LeukemiaR01CA190843 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI FEUSNER, JAMES, SOHN, LYDIA L · 2015 to 2019
$1.6M
DNA-Directed Micropatterning of Cells to Investigate Prostate Cancer Dormancy in the Bone MarrowF32CA243354 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI KOZMINSKY, MOLLY · 2019 to 2021
$195k
NCI NIH HHS F32 CA243354NCI NIH HHS R01 CA190843NIBIB NIH HHS R01 EB024989
6 · The paper itself

Abstract

Antibodies provide the functional biospecificity that has enabled the development of sensors, diagnostic tools, and assays in both laboratory and clinical settings. However, as multimarker screening becomes increasingly necessary due to the heterogeneity and complexity of human pathology, new methods must be developed that are capable of coordinating the precise assembly of multiple, distinct antibodies. To address this technological challenge, we engineered a bottom-up, high-throughput method in which DNA patterns, comprising unique 20-base pair oligonucleotides, are patterned onto a substrate using photolithography. These microfabricated surface patterns are programmed to hybridize with, and instruct the multiplexed assembly of, antibodies conjugated with the complementary DNA strands. We demonstrate that this simple, yet robust, approach preserves the antibody-binding functionality in two common applications: antibody-based cell capture and label-free surface marker screening. Using a simple proof-of-concept capture device, we achieved high purity separation of a breast cancer cell line, MCF-7, from a blood cell line, Jurkat, with capture purities of 77.4% and 96.6% when using antibodies specific for the respective cell types. We also show that antigen-antibody interactions slow cell trajectories in flow in the next-generation microfluidic node-pore sensing (NPS) device, enabling the differentiation of MCF-7 and Jurkat cells based on EpCAM surface-marker expression. Finally, we use a next-generation NPS device patterned with antibodies against E-cadherin, N-cadherin, and β-integrin-three markers that are associated with epithelial-mesenchymal transitions-to perform label-free surface marker screening of MCF10A, MCF-7, and Hs 578T breast epithelial cells. Our high-throughput, highly versatile technique enables rapid development of customized, antibody-based assays across a host of diverse diseases and research thrusts.

Indexed as

AntibodiesAntigens, CDBiomarkersCadherinsCell Line, TumorCell SeparationDNAEpithelial-Mesenchymal TransitionHumansImmunoassayIntegrin beta ChainsLab-On-A-Chip DevicesMicrofluidic Analytical TechniquesOligodeoxyribonucleotidesProof of Concept StudyAntibodiesAntigens, CDBiomarkersCadherinsCDH1 protein, humanCDH2 protein, humanDNAIntegrin beta ChainsOligodeoxyribonucleotidesantibody patterningbreast cancercell capturecell surface markersDNA-directed patterningnode-pore sensingphotolithography

Identifiers

PMID34546726
PMCPMC8817232

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.