Evidence map›Paper›PMID 34546463›Full record

ArticleHuman genetics2022

Clinical impact of rare variants associated with inherited channelopathies: a 5-year update.

Georgia Sarquella-Brugada, Anna Fernandez-Falgueras, Sergi Cesar, Elena Arbelo, Mónica Coll, Alexandra Perez-Serra, Marta Puigmulé, Anna Iglesias, Mireia Alcalde, Marta Vallverdú-Prats and 14 more

Abstract read
In one paragraph

Article in Human genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Discerning the Ambiguous Role of MissenseJournal of personalized medicine · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Georgia Sarquella-BrugadaMedical Science Department, School of Medicine, University of Girona, C/ Emili Grahit 77, 17003, Girona, Catalunya, Spain.
Anna Fernandez-FalguerasCardiovascular Genetics Center, University of Girona-IDIBGI, Girona, Spain.
Sergi CesarArrhythmias Unit, Hospital Sant Joan de Déu, University of Barcelona, Barcelona, Spain.
Elena ArbeloCentro de Investigación Biomédica en Red. Enfermedades Cardiovasculares (CIBERCV), Madrid, Spain.
Mónica CollCardiovascular Genetics Center, University of Girona-IDIBGI, Girona, Spain.
Alexandra Perez-SerraCardiovascular Genetics Center, University of Girona-IDIBGI, Girona, Spain.
Marta PuigmuléCardiovascular Genetics Center, University of Girona-IDIBGI, Girona, Spain.
Anna IglesiasCardiovascular Genetics Center, University of Girona-IDIBGI, Girona, Spain.
Mireia AlcaldeCardiovascular Genetics Center, University of Girona-IDIBGI, Girona, Spain.
Marta Vallverdú-PratsCardiovascular Genetics Center, University of Girona-IDIBGI, Girona, Spain.
Victoria FiolArrhythmias Unit, Hospital Sant Joan de Déu, University of Barcelona, Barcelona, Spain.
Carles Ferrer-CostaCardiovascular Genetics Center, University of Girona-IDIBGI, Girona, Spain.
Bernat Del OlmoCardiovascular Genetics Center, University of Girona-IDIBGI, Girona, Spain.
Ferran PicóCardiovascular Genetics Center, University of Girona-IDIBGI, Girona, Spain.
Laura LopezCardiovascular Genetics Center, University of Girona-IDIBGI, Girona, Spain.
Ana García-AlvarezCentro de Investigación Biomédica en Red. Enfermedades Cardiovasculares (CIBERCV), Madrid, Spain.
Paloma JordàCentro de Investigación Biomédica en Red. Enfermedades Cardiovasculares (CIBERCV), Madrid, Spain.
Coloma Tiron de LlanoCardiology Service, Hospital Josep Trueta, University of Girona, Girona, Spain.
Rocío ToroMedicine Department, School of Medicine, Cádiz, Spain.
Simone GrassiInstitute of Public Health, Section Legal Medicine, Catholic University, Rome, Italy.
Antonio OlivaInstitute of Public Health, Section Legal Medicine, Catholic University, Rome, Italy.
Josep BrugadaArrhythmias Unit, Hospital Sant Joan de Déu, University of Barcelona, Barcelona, Spain.
Ramon Brugada *Medical Science Department, School of Medicine, University of Girona, C/ Emili Grahit 77, 17003, Girona, Catalunya, Spain. ramon@brugada.org.
Oscar Campuzano *Medical Science Department, School of Medicine, University of Girona, C/ Emili Grahit 77, 17003, Girona, Catalunya, Spain. oscar@brugada.org.ORCID http://orcid.org/0000-0001-5298-5276

Funding

Instituto de Salud Carlos III FISInstituto de Salud Carlos III PI17/01690"la Caixa" Foundation LCF/PR/GN16/50290001"la Caixa" Foundation LCF/PR/GN19/50320002
6 · The paper itself

Abstract

A proper interpretation of the pathogenicity of rare variants is crucial before clinical translation. Ongoing addition of new data may modify previous variant classifications; however, how often a reanalysis is necessary remains undefined. We aimed to extensively reanalyze rare variants associated with inherited channelopathies originally classified 5 years ago and its clinical impact. In 2016, rare variants identified through genetic analysis were classified following the American College of Medical Genetics and Genomics' recommendations. Five years later, we have reclassified the same variants following the same recommendations but including new available data. Potential clinical implications were discussed. Our cohort included 49 cases of inherited channelopathies diagnosed in 2016. Update show that 18.36% of the variants changed classification mainly due to improved global frequency data. Reclassifications mostly occurred in minority genes associated with channelopathies. Similar percentage of variants remain as deleterious nowadays, located in main known genes (SCN5A, KCNH2 and KCNQ1). In 2016, 69.38% of variants were classified as unknown significance, but now, 53.06% of variants are classified as such, remaining the most common group. No management was modified after translation of genetic data into clinics. After 5 years, nearly 20% of rare variants associated with inherited channelopathies were reclassified. This supports performing periodic reanalyses of no more than 5 years since last classification. Use of newly available data is necessary, especially concerning global frequencies and family segregation. Personalized clinical translation of rare variants can be crucial to management if a significant change in classification is identified.

Indexed as

ChannelopathiesGenetic TestingGenomicsHumansKCNQ1 Potassium ChannelMutationKCNQ1 Potassium Channel

Identifiers

PMID34546463
PMCPMC9522753

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.