Evidence map›Paper›PMID 34545500›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2022

Assessment of Mitochondrial DNA Copy Number, Stability, and Repair in Arabidopsis.

Déborah Schatz-Daas, Arnaud Fertet, Frédérique Lotfi, José M Gualberto

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Plant MutS2 proteins function in plastid ribosome quality control.bioRxiv : the preprint server for biology · 2025
    Article
  4. Article
  5. Review
  6. Mitochondrial DNA Isolation from Plants.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Déborah Schatz-DaasInstitut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg, France.
Arnaud FertetInstitut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg, France.
Frédérique LotfiInstitut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg, France.
José M GualbertoInstitut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg, France. jose.gualberto@ibmp-cnrs.unistra.fr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mitochondrial functions depend on the proper maintenance and expression of the mitochondrial genome (mtDNA). Therefore, understanding mtDNA replication and repair requires methods to assess its integrity. Mutations or chemical treatments that affect processes involved in the maintenance or stability of the mtDNA can affect its global copy number, but also the relative abundance of different genomic regions or the frequency of illegitimate recombination across repeated sequences. These can be conveniently tested by quantitative PCR (qPCR). Arabidopsis thaliana offers several advantages for studying these processes, because of the extensive collections of mutants, natural accessions and other genetic resources available from stock centers. Here we describe protocols we routinely use to explore changes in mtDNA copy number and relative stoichiometry in Arabidopsis mutants of genes involved in the replication, repair and recombination of the mtDNA.

Indexed as

ArabidopsisArabidopsis ProteinsDNA Copy Number VariationsDNA, MitochondrialMitochondriaArabidopsis ProteinsDNA, MitochondrialArabidopsisCiprofloxacinCopy numberHomologous recombinationMitochondriamtDNAPlantsqPCR

Identifiers

PMID34545500

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.