Evidence map›Paper›PMID 34545373›Full record

ArticlemedRxiv : the preprint server for health sciences2021

SARS-CoV-2 serology across scales: a framework for unbiased seroprevalence estimation incorporating antibody kinetics and epidemic recency.

Saki Takahashi, Michael J Peluso, Jill Hakim, Keirstinne Turcios, Owen Janson, Isobel Routledge, Michael P Busch, Rebecca Hoh, Viva Tai, J Daniel Kelly and 5 more

Abstract readPreprint
In one paragraph

Article in medRxiv : the preprint server for health sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors.

Saki TakahashiDivision of HIV, Infectious Diseases & Global Medicine, University of California, San Francisco, USA.
Michael J PelusoDivision of HIV, Infectious Diseases & Global Medicine, University of California, San Francisco, USA.
Jill HakimDivision of HIV, Infectious Diseases & Global Medicine, University of California, San Francisco, USA.
Keirstinne TurciosDivision of HIV, Infectious Diseases & Global Medicine, University of California, San Francisco, USA.
Owen JansonDivision of HIV, Infectious Diseases & Global Medicine, University of California, San Francisco, USA.
Isobel RoutledgeDivision of HIV, Infectious Diseases & Global Medicine, University of California, San Francisco, USA.
Michael P BuschDepartment of Laboratory Medicine, University of California, San Francisco, USA.
Rebecca HohDivision of HIV, Infectious Diseases & Global Medicine, University of California, San Francisco, USA.
Viva TaiDivision of HIV, Infectious Diseases & Global Medicine, University of California, San Francisco, USA.
J Daniel KellyDepartment of Epidemiology and Biostatistics, University of California, San Francisco, USA.
Jeffrey N MartinDepartment of Epidemiology and Biostatistics, University of California, San Francisco, USA.
Steven G DeeksDivision of HIV, Infectious Diseases & Global Medicine, University of California, San Francisco, USA.
Timothy J HenrichDivision of Experimental Medicine, University of California, San Francisco, USA.
Bryan GreenhouseDivision of HIV, Infectious Diseases & Global Medicine, University of California, San Francisco, USA.
Isabel Rodríguez-BarraquerDivision of HIV, Infectious Diseases & Global Medicine, University of California, San Francisco, USA.

Funding

MIDAS Coordination CenterU24GM132013 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HOCHHEISER, HARRY S · 2019 to 2023
$8.1M
Training in HIV Translational ResearchT32AI060530 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Diane V Havlir · 2005 to 2026
$6.4M
Uncovering the dynamics of human pathogens using high throughput multiplexed serological toolsR35GM138361 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI RODRÍGUEZ-BARRAQUER, ISABEL · 2020 to 2024
$1.6M
Mentoring translational scientists in international infectious disease researchK24AI144048 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Bryan R Greenhouse · 2019 to 2026
$1.6M
Understanding the epidemiology and natural history of unrecognized Ebola virus infectionK23AI146268 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KELLY, JOHN DANIEL · 2019 to 2022
$748k
NIAID NIH HHS K23 AI146268NIAID NIH HHS K24 AI144048NIAID NIH HHS L30 AI126521NIAID NIH HHS T32 AI060530NIGMS NIH HHS R35 GM138361NIGMS NIH HHS U24 GM132013
6 · The paper itself

Abstract

Serosurveys are a key resource for measuring SARS-CoV-2 cumulative incidence. A growing body of evidence suggests that asymptomatic and mild infections (together making up over 95% of all infections) are associated with lower antibody titers than severe infections. Antibody levels also peak a few weeks after infection and decay gradually. We developed a statistical approach to produce adjusted estimates of seroprevalence from raw serosurvey results that account for these sources of spectrum bias. We incorporate data on antibody responses on multiple assays from a post-infection longitudinal cohort, along with epidemic time series to account for the timing of a serosurvey relative to how recently individuals may have been infected. We applied this method to produce adjusted seroprevalence estimates from five large-scale SARS-CoV-2 serosurveys across different settings and study designs. We identify substantial differences between reported and adjusted estimates of over two-fold in the results of some surveys, and provide a tool for practitioners to generate adjusted estimates with pre-set or custom parameter values. While unprecedented efforts have been launched to generate SARS-CoV-2 seroprevalence estimates over this past year, interpretation of results from these studies requires properly accounting for both population-level epidemiologic context and individual-level immune dynamics.

Identifiers

PMID34545373
PMCPMC8452112

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.