Evidence map›Paper›PMID 34544282›Full record

ArticlemBio2021

HIV-1 Genomes Are Enriched in Memory CD4

Vincent Morcilla, Charline Bacchus-Souffan, Katie Fisher, Bethany A Horsburgh, Bonnie Hiener, Xiao Qian Wang, Timothy E Schlub, Mark Fitch, Rebecca Hoh, Frederick M Hecht and 6 more

Open access · goldAbstract read
In one paragraph

Article in mBio, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 23 citations in OpenAlex.

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  14. Viral proteases as therapeutic targets.Molecular aspects of medicine · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 2 countries.

Vincent Morcilla *Centre for Virus Research, The Westmead Institute for Medical Research, The University of Sydney, Sydney, New South Wales, Australia.
Charline Bacchus-Souffan *Division of Experimental Medicine, Department of Medicine, University of California San Francisco, San Francisco, California, USA.
Katie Fisher *Centre for Virus Research, The Westmead Institute for Medical Research, The University of Sydney, Sydney, New South Wales, Australia.ORCID 0000-0002-8732-706X
Bethany A HorsburghCentre for Virus Research, The Westmead Institute for Medical Research, The University of Sydney, Sydney, New South Wales, Australia.
Bonnie HienerCentre for Virus Research, The Westmead Institute for Medical Research, The University of Sydney, Sydney, New South Wales, Australia.
Xiao Qian WangCentre for Virus Research, The Westmead Institute for Medical Research, The University of Sydney, Sydney, New South Wales, Australia.
Timothy E SchlubSydney School of Public Health, Faculty of Medicine and Health, The University of Sydney, Sydney, New South Wales, Australia.
Mark FitchDepartment of Nutritional Sciences and Toxicology, University of California Berkeley, Berkeley, California, USA.
Rebecca HohDivision of HIV, Infectious Diseases and Global Medicine, Department of Medicine, Zuckerberg San Francisco General Hospital, University of California San Francisco, San Francisco, California, USA.
Frederick M HechtDivision of HIV, Infectious Diseases and Global Medicine, Department of Medicine, Zuckerberg San Francisco General Hospital, University of California San Francisco, San Francisco, California, USA.
Jeffrey N MartinDivision of HIV, Infectious Diseases and Global Medicine, Department of Medicine, Zuckerberg San Francisco General Hospital, University of California San Francisco, San Francisco, California, USA.
Steven G DeeksDivision of HIV, Infectious Diseases and Global Medicine, Department of Medicine, Zuckerberg San Francisco General Hospital, University of California San Francisco, San Francisco, California, USA.
Marc K HellersteinDepartment of Nutritional Sciences and Toxicology, University of California Berkeley, Berkeley, California, USA.
Joseph M McCuneGlobal Health Innovative Technology Solutions/HIV Frontiers, Bill & Melinda Gates Foundation, Seattle, Washington, USA.
Peter W HuntDivision of Experimental Medicine, Department of Medicine, University of California San Francisco, San Francisco, California, USA.
Sarah PalmerCentre for Virus Research, The Westmead Institute for Medical Research, The University of Sydney, Sydney, New South Wales, Australia.
The University of Sydney · AUSan Francisco General Hospital · USUniversity of California, Berkeley · USUniversity of California, San Francisco · USGates Foundation · US

Funding

Viral reservoirs and sanctuaries in HAART - treated patients: role and mechanismsU19AI096109 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SCHACKER, TIMOTHY W · 2011 to 2015
$29.5M
Delaney AIDS Research Enterprise to Cure HIVUM1AI126611 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DEEKS, STEVEN GRANT, PICKER, LOUIS J. · 2016 to 2020
$27.9M
Timing of ART and homeostasis of the persistent HIV reservoir in the adultR01AI116368 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HUNT, PETER W · 2015 to 2019
$3.7M
Persistent Functional Immune Defects in Treated HIV InfectionK24AI145806 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HUNT, PETER W · 2020 to 2024
$921k
NIAID NIH HHS K24 AI145806NIAID NIH HHS R01 AI116368NIAID NIH HHS U19 AI096109NIAID NIH HHS UM1 AI126611
6 · The paper itself

Abstract

Future HIV-1 curative therapies require a thorough understanding of the distribution of genetically-intact HIV-1 within T-cell subsets during antiretroviral therapy (ART) and the cellular mechanisms that maintain this reservoir. Therefore, we sequenced near-full-length HIV-1 genomes and identified genetically-intact and genetically-defective genomes from resting naive, stem-cell memory, central memory, transitional memory, effector memory, and terminally-differentiated CD4

Indexed as

Immunological Memory CellsAdultCD4-Positive T-LymphocytesDisease ReservoirsGenome, ViralHalf-LifeHIV-1HIV InfectionsHumansLymphocyte CountMaleMiddle AgedProvirusesVirus Latencycell proliferationcellular half-lifehuman immunodeficiency viruspersistence

Identifiers

PMID34544282
PMCPMC8546577
OpenAlexW3200376775

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.