Evidence map›Paper›PMID 34544129›Full record

ArticleG3 (Bethesda, Md.)2021

Genome archaeology of two laboratory Salmonella enterica enterica sv Typhimurium.

Julie Zaworski, Oyut Dagva, Anthony W Kingston, Alexey Fomenkov, Richard D Morgan, Lionello Bossi, Elisabeth A Raleigh

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Julie ZaworskiResearch Department, New England Biolabs, Ipswich, MA 01938-2723, USA.ORCID 0000-0003-4744-7208
Oyut DagvaResearch Department, New England Biolabs, Ipswich, MA 01938-2723, USA.ORCID 0000-0001-6337-7639
Anthony W KingstonResearch Department, New England Biolabs, Ipswich, MA 01938-2723, USA.
Alexey FomenkovResearch Department, New England Biolabs, Ipswich, MA 01938-2723, USA.ORCID 0000-0002-2463-5946
Richard D MorganResearch Department, New England Biolabs, Ipswich, MA 01938-2723, USA.
Lionello BossiCEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), University Paris-Saclay, Gif-sur-Yvette 91198, France.
Elisabeth A RaleighResearch Department, New England Biolabs, Ipswich, MA 01938-2723, USA.ORCID 0000-0003-0745-9925
New England Biolabs (United States) · USCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Salmonella research community has used strains and bacteriophages over decades, exchanging useful new isolates among laboratories for the study of cell surface antigens, metabolic pathways and restriction-modification (RM) studies. Here we present the sequences of two laboratory Salmonella strains (STK005, an isolate of LB5000; and its descendant ER3625). In the ancestry of LB5000, segments of ∼15 and ∼42 kb were introduced from Salmonella enterica sv Abony 803 into S. enterica sv Typhimurium LT2, forming strain SD14; this strain is thus a hybrid of S. enterica isolates. Strains in the SD14 lineage were used to define flagellar antigens from the 1950s to the 1970s, and to define three RM systems from the 1960s to the 1980s. LB5000 was also used as a host in phage typing systems used by epidemiologists. In the age of cheaper and easier sequencing, this resource will provide access to the sequence that underlies the extensive literature.

Indexed as

BacteriophagesSalmonella typhimuriumArchaeologyLaboratoriesProphages6-methyladenineER3625Gifsy prophagesH antigenhybrid genomeIS200 mobilityprophagesSalmonella LB5000SenLT2III (StySA)SenLT2II (StySB)SenLT2I (StyLT)transduction scars

Identifiers

PMID34544129
PMCPMC8496262
OpenAlexW3181703890

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.