Evidence map›Paper›PMID 34544124›Full record

ArticleG3 (Bethesda, Md.)2021

Metagenome-assembled genome (MAG) of Oceancaulis alexandrii NP7 isolated from Mediterranean Sea polluted marine sediments and its bioremediation potential.

Filippo Dell'Anno, Leonardo Joaquim van Zyl, Marla Trindade, Christophe Brunet, Antonio Dell'Anno, Adrianna Ianora, Clementina Sansone

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 7 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Filippo Dell'AnnoStazione Zoologica Anton Dohrn, Istituto Nationale di Biologia, Ecologia e Biotecnologie marine, 80121 Naples, Italy.
Leonardo Joaquim van ZylDepartment of Biotechnology, Institute for Microbial Biotechnology and Metagenomics (IMBM), University of the Western Cape, 7535 Bellville, Cape Town, South Africa.
Marla TrindadeDepartment of Biotechnology, Institute for Microbial Biotechnology and Metagenomics (IMBM), University of the Western Cape, 7535 Bellville, Cape Town, South Africa.
Christophe BrunetStazione Zoologica Anton Dohrn, Istituto Nationale di Biologia, Ecologia e Biotecnologie marine, 80121 Naples, Italy.
Antonio Dell'AnnoDepartment of Life and Environmental Science, Università Politecnica delle Marche, 6031 Ancona, Italy.
Adrianna IanoraStazione Zoologica Anton Dohrn, Istituto Nationale di Biologia, Ecologia e Biotecnologie marine, 80121 Naples, Italy.
Clementina SansoneStazione Zoologica Anton Dohrn, Istituto Nationale di Biologia, Ecologia e Biotecnologie marine, 80121 Naples, Italy.
Stazione Zoologica Anton Dohrn · ITUniversity of the Western Cape · ZAMarche Polytechnic University · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Oceanicaulis alexandrii strain NP7 is a marine bacterium which belongs to the Hyphomonadaceae family and was isolated from sediments highly contaminated with metals and polycyclic aromatic hydrocarbons released for decades by industrial activities in the Gulf of Naples (Mediterranean Sea). Here, we report the partial genome sequence and annotation of O. alexandrii strain NP7 that contains a chromosome of 2,954,327 bp and encodes for 2914 predicted coding sequences (CDSs) and 44 RNA-encoding genes. Although the presence of some CDSs for genes involved in hydrocarbon degradation processes (e.g., alkB) have already been described in the literature associated with the Oceanicaulis, this is the first time that more than 100 genes involved in metal detoxification processes and hydrocarbon degradation are reported belonging to this genus. The presence of a heterogeneous set of genes involved in stress response, hydrocarbon degradation, heavy metal resistance, and detoxification suggests a possible role for O. alexandrii NP7 in the bioremediation of these highly contaminated marine sediments.

Indexed as

Geologic SedimentsMetagenomeAlphaproteobacteriaBiodegradation, EnvironmentalMediterranean SeabioremediationMediterannean Seametagenome assembled genomeOceanicaulis alexandrii

Identifiers

PMID34544124
PMCPMC8496225
OpenAlexW3173475588

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.