Evidence map›Paper›PMID 34543389›Full record

ArticleBlood advances2021

Defining the transcriptional control of pediatric AML highlights RARA as a superenhancer-regulated druggable dependency.

Monika W Perez, Oscar Sias-Garcia, Alfred Daramola, Helen Wei, Maci Terrell, Raushan Rashid, Woojun D Park, Kevin Duong, Terzah M Horton, Feng Li and 8 more

Open access · goldAbstract read
In one paragraph

Article in Blood advances, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 2 institutions in 1 country.

Monika W PerezDepartment of Human and Molecular Genetics.
Oscar Sias-GarciaDepartment of Pediatrics, Section of Hematology-Oncology, Texas Children's Cancer and Hematology Centers.
Alfred DaramolaDepartment of Pediatrics, Section of Hematology-Oncology, Texas Children's Cancer and Hematology Centers.
Helen WeiDepartment of Human and Molecular Genetics.
Maci TerrellDepartment of Pediatrics, Section of Hematology-Oncology, Texas Children's Cancer and Hematology Centers.
Raushan RashidDepartment of Pediatrics, Section of Hematology-Oncology, Texas Children's Cancer and Hematology Centers.
Woojun D ParkDepartment of Human and Molecular Genetics.ORCID 0000-0002-4069-4954
Kevin DuongDepartment of Pediatrics, Section of Hematology-Oncology, Texas Children's Cancer and Hematology Centers.ORCID 0000-0001-8447-9642
Terzah M HortonDepartment of Pediatrics, Section of Hematology-Oncology, Texas Children's Cancer and Hematology Centers.
Feng LiDepartment of Pathology and Immunology, and.ORCID 0000-0002-9680-4614
Nikitha CherayilDepartment of Human and Molecular Genetics.
Jost Vrabic KorenDepartment of Human and Molecular Genetics.
Vincent U GantDepartment of Pediatrics, Section of Hematology-Oncology, Texas Children's Cancer and Hematology Centers.ORCID 0000-0003-3416-230X
Jacob J JuncoDepartment of Pediatrics, Section of Hematology-Oncology, Texas Children's Cancer and Hematology Centers.
Choladda V CurryDepartment of Pathology, Texas Children's Hospital, Baylor College of Medicine, Houston, TX.ORCID 0000-0003-4783-6991
Alexandra M StevensDepartment of Pediatrics, Section of Hematology-Oncology, Texas Children's Cancer and Hematology Centers.
Charles Y LinDepartment of Human and Molecular Genetics.ORCID 0000-0002-9155-090X
Joanna S YiDepartment of Pediatrics, Section of Hematology-Oncology, Texas Children's Cancer and Hematology Centers.ORCID 0000-0002-0914-8728
Children's Cancer Center · USBaylor College of Medicine · US

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Suzanne AW Fuqua · 2007 to 2026
$73.9M
PEDIATRIC ONCOLOGY CLINICAL RESEARCH TRAINING PROGRAMK12CA090433 · NCI · BAYLOR COLLEGE OF MEDICINE · PI CARL E ALLEN, Donald W. Parsons · 2002 to 2026
$18.5M
Identifying and Targeting Onocgenic MYC Enhancer Control in Pediatric TumorsR01CA215452 · NCI · BAYLOR COLLEGE OF MEDICINE · PI WESTBROOK, THOMAS · 2017 to 2021
$2.0M
Identifying Cell Stress Proteins that Predict Clinical Response in Pediatric AMLR01CA164024 · NCI · BAYLOR COLLEGE OF MEDICINE · PI HORTON, TERZAH M · 2013 to 2017
$1.7M
BD Biosciences Special Order LSRIIS10RR024574 · NCRR · BAYLOR COLLEGE OF MEDICINE · PI LUMPKIN, ELLEN A · 2009 to 2009
$430k
NCI NIH HHS K12 CA090433NCI NIH HHS P30 CA125123NCI NIH HHS R01 CA164024NCI NIH HHS R01 CA215452NCRR NIH HHS S10 RR024574
6 · The paper itself

Abstract

Somatic mutations are rare in pediatric acute myeloid leukemia (pAML), indicating that alternate strategies are needed to identify targetable dependencies. We performed the first enhancer mapping of pAML in 22 patient samples. Generally, pAML samples were distinct from adult AML samples, and MLL (KMT2A)-rearranged samples were also distinct from non-KMT2A-rearranged samples. Focusing specifically on superenhancers (SEs), we identified SEs associated with many known leukemia regulators. The retinoic acid receptor alpha (RARA) gene was differentially regulated in our cohort, and a RARA-associated SE was detected in 64% of the study cohort across all cytogenetic and molecular subtypes tested. RARA SE+ pAML cell lines and samples exhibited high RARA messenger RNA levels. These samples were specifically sensitive to the synthetic RARA agonist tamibarotene in vitro, with slowed proliferation, apoptosis induction, differentiation, and upregulated retinoid target gene expression, compared with RARA SE- samples. Tamibarotene prolonged survival and suppressed the leukemia burden of an RARA SE+ pAML patient-derived xenograft mouse model compared with a RARA SE- patient-derived xenograft. Our work shows that examining chromatin regulation can identify new, druggable dependencies in pAML and provides a rationale for a pediatric tamibarotene trial in children with RARA-high AML.

Indexed as

Leukemia, Myeloid, AcuteAnimalsChildCohort StudiesGene Expression RegulationHumansMice

Identifiers

PMID34543389
PMCPMC9153032
OpenAlexW3199940315

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.