Evidence map›Paper›PMID 34543105›Full record

ArticleJournal of bacteriology2021

Shigella flexneri Diguanylate Cyclases Regulate Virulence.

Ruchi Ojha, Ashley A Dittmar, Geoffrey B Severin, Benjamin J Koestler

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

  1. bioRxiv : the preprint server for biology · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Ruchi OjhaDepartment of Biological Sciences, Western Michigan Universitygrid.268187.2, Kalamazoo, Michigan, USA.ORCID 0000-0001-5186-2055
Ashley A DittmarDepartment of Biological Sciences, Western Michigan Universitygrid.268187.2, Kalamazoo, Michigan, USA.
Geoffrey B SeverinDepartment of Microbiology and Immunology, University of Michigan Medical Schoolgrid.471406.0, Ann Arbor, Michigan, USA.ORCID 0000-0003-2441-5916
Benjamin J KoestlerDepartment of Biological Sciences, Western Michigan Universitygrid.268187.2, Kalamazoo, Michigan, USA.ORCID 0000-0001-7213-0953
Western Michigan University · USUniversity of Michigan · US

Funding

Identifying the formate-sensory mechanism in Shigella flexneriR03AI156432 · NIAID · WESTERN MICHIGAN UNIVERSITY · PI KOESTLER, BENJAMIN J. · 2021 to 2022
$151k
NIAID NIH HHS R03 AI156432NIH HHS AI156432-01A1
6 · The paper itself

Abstract

Shigella flexneri is an intracellular human pathogen that invades colonic cells and causes bloody diarrhea. S. flexneri evolved from commensal Escherichia coli, and genome comparisons reveal that S. flexneri has lost approximately 20% of its genes through the process of pathoadaptation, including a disproportionate number of genes associated with the turnover of the nucleotide-based second messenger cyclic di-GMP (c-di-GMP); however, the remaining c-di-GMP turnover enzymes are highly conserved. c-di-GMP regulates many behavioral changes in other bacteria in response to changing environmental conditions, including biofilm formation, but this signaling system has not been examined in S. flexneri. In this study, we expressed VCA0956, a constitutively active c-di-GMP synthesizing diguanylate cyclase (DGC) from Vibrio cholerae, in S. flexneri to determine if virulence phenotypes were regulated by c-di-GMP. We found that expressing VCA0956 in S. flexneri increased c-di-GMP levels, and this corresponds with increased biofilm formation and reduced acid resistance, host cell invasion, and plaque size. We examined the impact of VCA0956 expression on the S. flexneri transcriptome and found that genes related to acid resistance were repressed, and this corresponded with decreased survival to acid shock. We also found that individual S. flexneri DGC mutants exhibit reduced biofilm formation and reduced host cell invasion and plaque size, as well as increased resistance to acid shock. This study highlights the importance of c-di-GMP signaling in regulating S. flexneri virulence phenotypes.

Indexed as

AquacultureCyclic GMPGene Expression Regulation, BacterialGene Expression Regulation, EnzymologicGenome, BacterialMutationPhosphorus-Oxygen LyasesShigella flexneriTranscriptomeVirulenceCyclic GMPPhosphorus-Oxygen Lyasesbiofilmc-di-GMPcell-cell spreaddiguanylate cyclaseintracellular pathogeninvasionShigella

Identifiers

PMID34543105
PMCPMC8570270
OpenAlexW3200225563

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.