Evidence map›Paper›PMID 34538872›Full record

ArticleNature communications2021

Genetic and epigenetic basis of hepatoblastoma diversity.

Genta Nagae, Shogo Yamamoto, Masashi Fujita, Takanori Fujita, Aya Nonaka, Takayoshi Umeda, Shiro Fukuda, Kenji Tatsuno, Kazuhiro Maejima, Akimasa Hayashi and 13 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed, 2 pooled it
6.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 2 syntheses or guidelines pooled it, 112 citations in OpenAlex.

  1. Multiancestry Transcriptome-Wide Association Study Identifies Candidate Genes Associated with Hepatoblastoma.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2025
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  5. Differential Wnt/β-catenin signaling via TCF7L2/LEF1 binding specificity shapes cellular and tumor phenotypes.Proceedings of the National Academy of Sciences of the United States of America · 2026
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14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 11 institutions in 1 country.

Genta Nagae *Genome Science Laboratory, Research Center for Advanced Science and Technology (RCAST), the University of Tokyo, Tokyo, Japan.ORCID http://orcid.org/0000-0002-2929-7990
Shogo Yamamoto *Genome Science Laboratory, Research Center for Advanced Science and Technology (RCAST), the University of Tokyo, Tokyo, Japan.ORCID http://orcid.org/0000-0002-5564-2567
Masashi Fujita *Laboratory for Cancer Genomics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.ORCID http://orcid.org/0000-0002-1457-6233
Takanori FujitaGenome Science Laboratory, Research Center for Advanced Science and Technology (RCAST), the University of Tokyo, Tokyo, Japan.
Aya NonakaGenome Science Laboratory, Research Center for Advanced Science and Technology (RCAST), the University of Tokyo, Tokyo, Japan.
Takayoshi UmedaGenome Science Laboratory, Research Center for Advanced Science and Technology (RCAST), the University of Tokyo, Tokyo, Japan.ORCID http://orcid.org/0000-0002-9678-0122
Shiro FukudaGenome Science Laboratory, Research Center for Advanced Science and Technology (RCAST), the University of Tokyo, Tokyo, Japan.ORCID http://orcid.org/0000-0002-0065-662X
Kenji TatsunoGenome Science Laboratory, Research Center for Advanced Science and Technology (RCAST), the University of Tokyo, Tokyo, Japan.ORCID http://orcid.org/0000-0002-3046-3941
Kazuhiro MaejimaLaboratory for Cancer Genomics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Akimasa HayashiGenome Science Laboratory, Research Center for Advanced Science and Technology (RCAST), the University of Tokyo, Tokyo, Japan.ORCID http://orcid.org/0000-0002-7424-8127
Sho KuriharaDepartment of Pediatric Surgery, Hiroshima University Hospital, Hiroshima, Japan.
Masato KojimaDepartment of Pediatric Surgery, Hiroshima University Hospital, Hiroshima, Japan.
Tomoro HishikiChiba University Graduate School of Medicine, Chiba, Japan.
Kenichiro WatanabeShizuoka Children's Hospital, Shizuoka, Japan.
Kohmei IdaDepartment of Pediatrics, Teikyo University Mizonokuchi Hospital, Kawasaki, Japan.
Michihiro YanoDepartment of Pediatrics, Akita University Hospital, Akita, Japan.
Yoko HiyamaDepartment of Biomedical Science, Natural Science Center for Basic Research and Development, Hiroshima University, Hiroshima, Japan, 734-8551, 1-2-3, Kasumi, Minami-ku, Hiroshima.
Yukichi TanakaDepartment of Pathology, Kanagawa Children's Medical Center, Yokohama, Japan.
Takeshi InoueDepartment of Pathology, Osaka City General Hospital, Osaka, Japan.
Hiroki UedaGenome Science Laboratory, Research Center for Advanced Science and Technology (RCAST), the University of Tokyo, Tokyo, Japan.
Hidewaki NakagawaLaboratory for Cancer Genomics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Hiroyuki AburataniGenome Science Laboratory, Research Center for Advanced Science and Technology (RCAST), the University of Tokyo, Tokyo, Japan.ORCID http://orcid.org/0000-0003-0438-1544
Eiso HiyamaDepartment of Pediatric Surgery, Hiroshima University Hospital, Hiroshima, Japan. eiso@hiroshima-u.ac.jp.ORCID http://orcid.org/0000-0001-9179-5037
The University of Tokyo · JPRIKEN Center for Integrative Medical Sciences · JPHiroshima University · JPHiroshima University Hospital · JPAkita University Hospital · JPChiba University · JPKanagawa Children's Medical Center · JPKyorin University · JPOsaka City General Hospital · JPShizuoka Children's Hospital · JPTeikyo University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hepatoblastoma (HB) is the most common pediatric liver malignancy; however, hereditary predisposition and acquired molecular aberrations related to HB clinicopathological diversity are not well understood. Here, we perform an integrative genomic profiling of 163 pediatric liver tumors (154 HBs and nine hepatocellular carcinomas) based on the data acquired from a cohort study (JPLT-2). The total number of somatic mutations is precious low (0.52/Mb on exonic regions) but correlated with age at diagnosis. Telomerase reverse transcriptase (TERT) promoter mutations are prevalent in the tween HBs, selective in the transitional liver cell tumor (TLCT, > 8 years old). DNA methylation profiling reveals that classical HBs are characterized by the specific hypomethylated enhancers, which are enriched with binding sites for ASCL2, a regulatory transcription factor for definitive endoderm in Wnt-pathway. Prolonged upregulation of ASCL2, as well as fetal-liver-like methylation patterns of IGF2 promoters, suggests their "cell of origin" derived from the premature hepatoblast, similar to intestinal epithelial cells, which are highly proliferative. Systematic molecular profiling of HB is a promising approach for understanding the epigenetic drivers of hepatoblast carcinogenesis and deriving clues for risk stratification.

Indexed as

DNA MethylationEpigenesis, GeneticGene Expression Regulation, Neoplasticbeta CateninChild, PreschoolChromatin Immunoprecipitation SequencingCohort StudiesDNA Copy Number VariationsExome SequencingFemaleHepatoblastomaHumansInfantKaplan-Meier EstimateLiver NeoplasmsMalebeta CateninTelomerase

Identifiers

PMID34538872
PMCPMC8450290
OpenAlexW3200326344

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.