Evidence map›Paper›PMID 34537241›Full record

ArticleThe Journal of biological chemistry2021

Structural and kinetic analyses of holothurian sulfated glycans suggest potential treatment for SARS-CoV-2 infection.

Rohini Dwivedi, Priyanka Samanta, Poonam Sharma, Fuming Zhang, Sushil K Mishra, Pavel Kucheryavy, Seon Beom Kim, AyoOluwa O Aderibigbe, Robert J Linhardt, Ritesh Tandon and 2 more

Open access · goldAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 48 citations in OpenAlex.

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  12. The Sea CucumberJournal of natural products · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Rohini DwivediDepartment of BioMolecular Sciences, University of Mississippi, Oxford, Mississippi, USA.
Priyanka SamantaDepartment of BioMolecular Sciences, University of Mississippi, Oxford, Mississippi, USA.
Poonam SharmaDepartment of Microbiology and Immunology, University of Mississippi Medical Center, Jackson, Mississippi, USA.
Fuming ZhangCenter for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute, Troy, New York, USA.
Sushil K MishraDepartment of BioMolecular Sciences, University of Mississippi, Oxford, Mississippi, USA.
Pavel KucheryavyDepartment of BioMolecular Sciences, University of Mississippi, Oxford, Mississippi, USA.
Seon Beom KimDepartment of BioMolecular Sciences, University of Mississippi, Oxford, Mississippi, USA.
AyoOluwa O AderibigbeDepartment of BioMolecular Sciences, University of Mississippi, Oxford, Mississippi, USA.
Robert J LinhardtCenter for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute, Troy, New York, USA.
Ritesh TandonDepartment of Microbiology and Immunology, University of Mississippi Medical Center, Jackson, Mississippi, USA.
Robert J DoerksenDepartment of BioMolecular Sciences, University of Mississippi, Oxford, Mississippi, USA; Research Institute of Pharmaceutical Sciences, School of Pharmacy, University of Mississippi, Oxford, Mississippi, USA.
Vitor H PominDepartment of BioMolecular Sciences, University of Mississippi, Oxford, Mississippi, USA; Research Institute of Pharmaceutical Sciences, School of Pharmacy, University of Mississippi, Oxford, Mississippi, USA. Electronic address: vpomin@olemiss.edu.
University of Mississippi · USRensselaer Polytechnic Institute · USUniversity of Mississippi Medical Center · US

Funding

Tracking Glycosylation State with Fluorinated Glycosides ProbesP20GM130460 · NIGMS · UNIVERSITY OF MISSISSIPPI · PI Joshua S Sharp · 2020 to 2026
$17.9M
Biacore T200 Surface Plasmon Resonance SpectroscopyS10OD028523 · OD · RENSSELAER POLYTECHNIC INSTITUTE · PI LINHARDT, ROBERT J · 2020 to 2020
$344k
Disruption of CS/KSPG-Mediated Neuronal Outgrowth InhibitionR03NS110996 · NINDS · UNIVERSITY OF MISSISSIPPI · PI POMIN, VITOR HUGO · 2020 to 2020
$142k
NIGMS NIH HHS P20 GM130460NIH HHS S10 OD028523NINDS NIH HHS R03 NS110996
6 · The paper itself

Abstract

Certain sulfated glycans, including those from marine sources, can show potential effects against SARS-CoV-2. Here, a new fucosylated chondroitin sulfate (FucCS) from the sea cucumber Pentacta pygmaea (PpFucCS) (MW ∼10-60 kDa) was isolated and structurally characterized by NMR. PpFucCS is composed of {→3)-β-GalNAcX-(1→4)-β-GlcA-[(3→1)Y]-(1→}, where X = 4S (80%), 6S (10%) or nonsulfated (10%), Y = α-Fuc2,4S (40%), α-Fuc2,4S-(1→4)-α-Fuc (30%), or α-Fuc4S (30%), and S = SO

Indexed as

AnimalsBinding SitesChondroitin SulfatesCOVID-19KineticsMolecular Docking SimulationMolecular Dynamics SimulationMutagenesis, Site-DirectedPartial Thromboplastin TimePolysaccharidesProtein BindingSARS-CoV-2Sea CucumbersSpike Glycoprotein, CoronavirusSulfatesSurface Plasmon ResonanceChondroitin Sulfatesfucosylated chondroitin sulfatePolysaccharidesSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2Sulfatesanticoagulationfucosylated chondroitin sulfatemolecular modelingnuclear magnetic resonancesurface plasmon resonanceviral inhibition

Identifiers

PMID34537241
PMCPMC8445769
OpenAlexW3199585729

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.