Evidence map›Paper›PMID 34536145›Full record

ArticleTropical animal health and production2021

Phylogenetic analysis of West Nile virus: first report of lineage 1 in donkey in Turkey.

Yakup Yıldırım, Volkan Yılmaz, Kemal Yazıcı, Cem Öziç, Aykut Ozkul, Abdurrahman Anıl Çağırgan

Abstract read
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In one paragraph

Article in Tropical animal health and production, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Yakup YıldırımDepartment of Virology, Faculty of Veterinary Medicine, Mehmet Akif Ersoy University, Burdur, 15100, Turkey. yayildirim@hotmail.com.
Volkan YılmazDepartment of Virology, Faculty of Veterinary Medicine, Kafkas University, Kars, Turkey.
Kemal YazıcıVocational School of Technical Sciences, Ardahan University, Ardahan, Turkey.
Cem ÖziçDepartment of Bioengineering, Faculty of Engineering-Architecture, Kafkas University, Kars, Turkey.
Aykut OzkulDepartment of Virology, Faculty of Veterinary Medicine, Ankara University, Ankara, Turkey.
Abdurrahman Anıl ÇağırganDepartment of Virology, Izmir/Bornova Veterinary Control Institute, Izmir, Turkey.
Kafkas University · TRAnkara University · TRArdahan University · TRBurdur Mehmet Akif Ersoy Üniversitesi · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

West Nile virus (WNV), a member of the Flaviviridae, is a major arbovirus that causes West Nile fever. Previous data showed the prevalence of the WNV serologically and molecular in Turkey, and the presence of lineage 1 in horses and humans has been reported. This is the first notification of partial phylogeny of WNV detected in donkeys in the northeast of Turkey (on the Iranian border). Blood serum samples collected from 25 donkeys without clinical symptoms were tested by RT-PCR. Sequence analysis of the sample detected as positive was performed. Multiple sequence alignments of reference sequences taken from GenBank were performed using the ClustalW method using the MEGA6 program. Partial nucleotide sequences of the capsid gene coding region revealed that the strains are closely related to viruses of lineage 1, clade 1a. According to the phylogenetic tree, the TUR/Igdir/donkey strain was included in the same cluster as the strain (KJ958922) previously obtained from horses in Turkey and the strain (GQ851658) from the Central African Republic. This study is the first report to show the circulation of WNV lineage 1 in donkeys in Turkey.

Indexed as

West Nile virusAnimalsEquidaeHorsesIranPhylogenyTurkeyDonkeyNortheast AnatoliaPhylogenyTurkeyWest Nile virus

Identifiers

PMID34536145
OpenAlexW3201441352

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.