Evidence map›Paper›PMID 34535792›Full record

ReviewNature reviews. Genetics2021

The biological and clinical significance of emerging SARS-CoV-2 variants.

Kaiming Tao, Philip L Tzou, Janin Nouhin, Ravindra K Gupta, Tulio de Oliveira, Sergei L Kosakovsky Pond, Daniela Fera, Robert W Shafer

Abstract readReview
In one paragraph

Review in Nature reviews. Genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 654 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
654citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

654 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
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  8. Nanobodies targeting SARS-CoV-2 variants.Acta pharmaceutica Sinica. B · 2026
    Review
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594 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Kaiming Tao *Division of Infectious Diseases, Department of Medicine, Stanford University, Stanford, CA, USA.
Philip L Tzou *Division of Infectious Diseases, Department of Medicine, Stanford University, Stanford, CA, USA.
Janin NouhinDivision of Infectious Diseases, Department of Medicine, Stanford University, Stanford, CA, USA.ORCID 0000-0003-4985-8377
Ravindra K GuptaCambridge Institute for Therapeutic Immunology and Infectious Diseases, University of Cambridge, Cambridge, UK.
Tulio de OliveiraKwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), University of KwaZulu-Natal, Durban, South Africa.
Sergei L Kosakovsky PondInstitute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA, USA.
Daniela FeraDepartment of Chemistry and Biochemistry, Swarthmore College, Swarthmore, PA, USA.ORCID 0000-0002-1706-9288
Robert W ShaferDivision of Infectious Diseases, Department of Medicine, Stanford University, Stanford, CA, USA. rshafer@stanford.edu.ORCID 0000-0003-2513-2643

Funding

HIV Drug Resistance DatabaseR24AI136618 · NIAID · STANFORD UNIVERSITY · PI ROBERT William SHAFER · 2018 to 2026
$7.3M
NIAID NIH HHS R24 AI136618
6 · The paper itself

Abstract

The past several months have witnessed the emergence of SARS-CoV-2 variants with novel spike protein mutations that are influencing the epidemiological and clinical aspects of the COVID-19 pandemic. These variants can increase rates of virus transmission and/or increase the risk of reinfection and reduce the protection afforded by neutralizing monoclonal antibodies and vaccination. These variants can therefore enable SARS-CoV-2 to continue its spread in the face of rising population immunity while maintaining or increasing its replication fitness. The identification of four rapidly expanding virus lineages since December 2020, designated variants of concern, has ushered in a new stage of the pandemic. The four variants of concern, the Alpha variant (originally identified in the UK), the Beta variant (originally identified in South Africa), the Gamma variant (originally identified in Brazil) and the Delta variant (originally identified in India), share several mutations with one another as well as with an increasing number of other recently identified SARS-CoV-2 variants. Collectively, these SARS-CoV-2 variants complicate the COVID-19 research agenda and necessitate additional avenues of laboratory, epidemiological and clinical research.

Indexed as

MutationBiological EvolutionCOVID-19EpitopesHumansSARS-CoV-2Spike Glycoprotein, CoronavirusEpitopesSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2

Identifiers

PMID34535792
PMCPMC8447121

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.