Evidence map›Paper›PMID 34535684›Full record

ArticleNature communications2021

Synthetic essentiality between PTEN and core dependency factor PAX7 dictates rhabdomyosarcoma identity.

Casey G Langdon, Katherine E Gadek, Matthew R Garcia, Myron K Evans, Kristin B Reed, Madeline Bush, Jason A Hanna, Catherine J Drummond, Matthew C Maguire, Patrick J Leavey and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
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  7. miR-497 Target Gene Regulatory Network in Angiosarcoma.Molecular cancer research : MCR · 2024
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  14. The Combination of Trametinib and Ganitumab is Effective in RAS-Mutated PAX-Fusion Negative Rhabdomyosarcoma Models.Clinical cancer research : an official journal of the American Association for Cancer Research · 2023
    Article
  15. A SNAI2/CTCF Interaction is Required forMolecular and cellular biology · 2023
    Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 2 countries.

Casey G LangdonDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Katherine E GadekDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.ORCID http://orcid.org/0000-0001-5170-230X
Matthew R GarciaDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Myron K EvansDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.ORCID http://orcid.org/0000-0002-7678-5815
Kristin B ReedDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Madeline BushDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Jason A HannaDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Catherine J DrummondDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Matthew C MaguireDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Patrick J LeaveyDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.ORCID http://orcid.org/0000-0002-2822-1118
David FinkelsteinDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Hongjian JinCenter for Applied Bioinformatics, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Patrick A SchreinerCenter for Applied Bioinformatics, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Jerold E RehgDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Mark E HatleyDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA. mark.hatley@stjude.org.ORCID http://orcid.org/0000-0001-7147-3946
St. Jude Children's Research Hospital · USRhodes College · US

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI SUZANNE J. BAKER · 1985 to 2026
$166.9M
Defining the non-myogenic origins of pediatric rhabdomyosarcomaR01CA216344 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI HATLEY, MARK EDWARD · 2017 to 2021
$2.0M
Mediators Of Arrested Differentiation In Pediatric RhabdomyosarcomaR01CA251436 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI HATLEY, MARK EDWARD · 2021 to 2025
$2.0M
Determining the Mechanism of Transformation for RhabdomyosarcomaF31CA250398 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL GRADUATE SCHOOL OF BIOMEDICAL SCIENCES, LLC · PI SEARCY, MADELINE BUSH · 2021 to 2022
$85k
NCI NIH HHS F31 CA250398NCI NIH HHS P30 CA021765NCI NIH HHS R01 CA216344NCI NIH HHS R01 CA251436
6 · The paper itself

Abstract

PTEN promoter hypermethylation is nearly universal and PTEN copy number loss occurs in ~25% of fusion-negative rhabdomyosarcoma (FN-RMS). Here we show Pten deletion in a mouse model of FN-RMS results in less differentiated tumors more closely resembling human embryonal RMS. PTEN loss activated the PI3K pathway but did not increase mTOR activity. In wild-type tumors, PTEN was expressed in the nucleus suggesting loss of nuclear PTEN functions could account for these phenotypes. Pten deleted tumors had increased expression of transcription factors important in neural and skeletal muscle development including Dbx1 and Pax7. Pax7 deletion completely rescued the effects of Pten loss. Strikingly, these Pten;Pax7 deleted tumors were no longer FN-RMS but displayed smooth muscle differentiation similar to leiomyosarcoma. These data highlight how Pten loss in FN-RMS is connected to a PAX7 lineage-specific transcriptional output that creates a dependency or synthetic essentiality on the transcription factor PAX7 to maintain tumor identity.

Indexed as

AnimalsBreedingCell DifferentiationCell Line, TumorGene Expression Regulation, NeoplasticHomeodomain ProteinsHumansIntegrasesMechanistic Target of Rapamycin Complex 1MiceMice, KnockoutMuscle DevelopmentPAX7 Transcription FactorPhosphoproteinsProto-Oncogene Proteins c-aktPTEN PhosphohydrolaseCre recombinaseDbx1 protein, mouseHomeodomain ProteinsIntegrasesMechanistic Target of Rapamycin Complex 1PAX7 Transcription FactorPhosphoproteinsProto-Oncogene Proteins c-aktPTEN PhosphohydrolaseRNA, Messenger

Identifiers

PMID34535684
PMCPMC8448747
OpenAlexW3201244242

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.