Evidence map›Paper›PMID 34535093›Full record

ArticleBMC infectious diseases2021

Detection of Coccidioides posadasii in a patient with meningitis using metagenomic next-generation sequencing: a case report.

Yuqiao Mao, Xia Li, Haibo Lou, Xiaoyu Shang, Yanjun Mai, Lan Yang, Fuhua Peng, Xihua Fu

Abstract readCase Reports
In one paragraph

Article in BMC infectious diseases, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. Overview of the Current Challenges in Pulmonary Coccidioidomycosis.Journal of fungi (Basel, Switzerland) · 2024
    Review
  5. Review
  6. Review
  7. Review
  8. A Rare Case of Coccidioidomycosis Meningitis.Journal of medical cases · 2023
    Article
  9. Review
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yuqiao MaoDepartment of Infectious Diseases, Guangzhou Panyu Central Hospital, Guangzhou, China.
Xia LiDepartment of Infectious Diseases, Guangzhou Panyu Central Hospital, Guangzhou, China.
Haibo LouDepartment of Infectious Diseases, Guangzhou Panyu Central Hospital, Guangzhou, China.
Xiaoyu ShangDepartment of Infectious Diseases, Guangzhou Panyu Central Hospital, Guangzhou, China.
Yanjun MaiDepartment of Infectious Diseases, Guangzhou Panyu Central Hospital, Guangzhou, China.
Lan YangDepartment of Bioinformatics, Hugobiotech Co., Ltd., Beijing, China.
Fuhua PengDepartment of Neurology, Third Affiliated Hospital of Sun Yat-Sen University, Guangzhou, China. pengfh@mail.sysu.edu.cn.
Xihua FuDepartment of Infectious Diseases, Guangzhou Panyu Central Hospital, Guangzhou, China. lcyx1989@163.com.ORCID http://orcid.org/0000-0003-1508-6890

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCoccidioidomycosis is a systemic infection caused by dimorphic fungi Coccidioides spp. endemic to Southwestern United States and Central and South America. A history of residence and travel in these areas is essential for the diagnostic of coccidioidomycosis, which has highly variable symptoms ranging from asymptomatic to severe, disseminated infection, and even death. Immunocompromised patients of coccidioidomycosis experience a high risk of dissemination, chronic infection, and mortality. Meningitis is one of the most deleterious coccidioidomycosis and can cause various life-threatening complications. CASE PRESENTATION: Here we report a case of Coccidioides posadasii meningitis in a 49-year-old female who returned to China after one and a half years residence in Los Angeles, USA. The repeated routine cultures using CSF for bacteria or fungi were all negative. To hunt for an infectious etiology, the state-of-the-art technology metagenomic next-generation sequencing (mNGS) was then utilized, suggesting Coccidioides posadasii. Organizational pathological examination and polymerase-chain-reaction (PCR) results subsequently confirmed the mNGS detection.

conclusionTo our knowledge, cases for coccidioidal meningitis have been rarely reported in China. While global travelling may spread this disease across continents and make the diagnosis more difficult. mNGS can detect almost all known pathogens with high sensitivity and specificity, especially for uncommon pathogen, such as Coccidioides posadasii in China.

Indexed as

CoccidioidomycosisMeningitis, FungalCoccidioidesFemaleHigh-Throughput Nucleotide SequencingHumansMiddle AgedCoccidioidomycosisMeningitisMetagenomic next-generation sequencing (mNGS)

Identifiers

PMID34535093
PMCPMC8447723

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.